| Chain sequence(s) |
A: GGGHKFG
C: GGGHKFG B: GGGHKFG D: GGGHKFG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:49)
[INFO] Main: Simulation completed successfully. (00:01:50)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2545 | |
| 2 | G | A | -1.2876 | |
| 3 | G | A | -1.7142 | |
| 4 | H | A | -1.7532 | |
| 5 | K | A | -2.2389 | |
| 6 | F | A | 0.8068 | |
| 7 | G | A | -0.3724 | |
| 1 | G | B | -1.2205 | |
| 2 | G | B | -1.3082 | |
| 3 | G | B | -1.6260 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -2.6192 | |
| 6 | F | B | 0.1175 | |
| 7 | G | B | -0.7861 | |
| 1 | G | C | -1.4334 | |
| 2 | G | C | -1.9886 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | -1.4682 | |
| 5 | K | C | -1.2980 | |
| 6 | F | C | 1.1434 | |
| 7 | G | C | -0.0249 | |
| 1 | G | D | -1.4369 | |
| 2 | G | D | -1.6099 | |
| 3 | G | D | -1.9267 | |
| 4 | H | D | -1.8030 | |
| 5 | K | D | -2.0823 | |
| 6 | F | D | 0.7721 | |
| 7 | G | D | 0.8624 |