Project name: d87892571043e61

Status: done

Started: 2025-06-03 04:57:26
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYNMHWVRQAPGQGLEWMGVIYSGNGDTSYAQKFKGRVTITADKSTSTAYMELSSLRSEDTAVYYCARERDTRFGNWGQGTLVTVSS
L: DIVMTQSPLSLPVTPGEPASISCRASESVDIYGQSFMHWYLQKPGQSPQLLIYLASNLESGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCQQNNEDPYTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:53)
Show buried residues

Minimal score value
-3.3486
Maximal score value
1.1543
Average score
-0.6815
Total score value
-155.3846

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4659
2 V H -1.0499
3 Q H -1.5679
4 L H 0.0000
5 V H -0.2174
6 Q H 0.0000
7 S H -0.5697
8 G H -0.5117
9 A H 0.2590
11 E H 0.0295
12 V H 0.9585
13 K H -0.9694
14 K H -2.1425
15 P H -1.8728
16 G H -1.6253
17 A H -1.2396
18 S H -1.3720
19 V H 0.0000
20 K H -1.9277
21 V H 0.0000
22 S H -0.6175
23 C H 0.0000
24 K H -0.9675
25 A H 0.0000
26 S H -0.9118
27 G H -0.9944
28 Y H -0.3816
29 T H -0.2148
30 F H 0.0000
35 T H -0.6175
36 S H -0.4416
37 Y H -0.5213
38 N H -0.7390
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4738
45 A H -0.8891
46 P H -0.7408
47 G H -1.2136
48 Q H -1.7240
49 G H -1.0227
50 L H 0.0000
51 E H -0.5337
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 V H 0.0021
56 I H 0.0000
57 Y H -0.5001
58 S H 0.0000
59 G H -1.2000
62 N H -1.8560
63 G H -1.7749
64 D H -2.1107
65 T H -0.9041
66 S H -0.7721
67 Y H -1.0983
68 A H 0.0000
69 Q H -2.9077
70 K H -2.7422
71 F H 0.0000
72 K H -2.5362
74 G H -1.7444
75 R H -1.5326
76 V H 0.0000
77 T H -0.8847
78 I H 0.0000
79 T H -0.4940
80 A H -0.7816
81 D H -1.1881
82 K H -1.4133
83 S H -0.8775
84 T H -0.7896
85 S H -0.9311
86 T H 0.0000
87 A H 0.0000
88 Y H -0.6000
89 M H 0.0000
90 E H -1.5859
91 L H 0.0000
92 S H -1.2083
93 S H -1.2878
94 L H 0.0000
95 R H -3.1222
96 S H -2.3748
97 E H -2.5645
98 D H 0.0000
99 T H -0.7351
100 A H 0.0000
101 V H 0.5663
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.8880
107 E H -1.4467
108 R H -2.4383
109 D H -2.0602
113 T H 0.0000
114 R H -1.3158
115 F H 0.0000
116 G H -1.1208
117 N H -0.9926
118 W H -0.7389
119 G H 0.0000
120 Q H -1.3178
121 G H -0.3882
122 T H 0.0000
123 L H 0.9615
124 V H 0.0000
125 T H -0.1336
126 V H 0.0000
127 S H -0.9842
128 S H -0.8444
1 D L -2.1099
2 I L 0.0000
3 V L 0.7928
4 M L 0.0000
5 T L -0.4076
6 Q L 0.0000
7 S L -0.2197
8 P L 0.2853
9 L L 1.1053
10 S L 0.2079
11 L L 0.0520
12 P L -0.4907
13 V L 0.0000
14 T L -1.4063
15 P L -1.7456
16 G L -2.3097
17 E L -2.4387
18 P L -2.0123
19 A L 0.0000
20 S L -0.7588
21 I L 0.0000
22 S L -0.8473
23 C L 0.0000
24 R L -2.2885
25 A L 0.0000
26 S L -0.8791
27 E L -1.4060
28 S L -1.2242
29 V L 0.0000
30 D L -0.5244
31 I L 0.7939
34 Y L 1.1543
35 G L -0.1198
36 Q L -0.6001
37 S L -0.4778
38 F L -0.2881
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 Q L -0.8172
45 K L -1.2046
46 P L -0.8167
47 G L -1.3180
48 Q L -1.8318
49 S L -1.2802
50 P L 0.0000
51 Q L -1.1857
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1771
56 L L -0.4604
57 A L 0.0000
65 S L -0.5970
66 N L -0.4954
67 L L -0.1755
68 E L -0.4139
69 S L -0.4844
70 G L -0.7474
71 V L 0.0000
72 P L -1.1063
74 D L -2.1406
75 R L -2.0147
76 F L 0.0000
77 S L -0.9612
78 G L -0.5549
79 S L -0.8186
80 G L -1.1258
83 S L -1.3090
84 G L -1.2176
85 T L -1.7306
86 D L -2.0669
87 F L 0.0000
88 T L -1.0122
89 L L 0.0000
90 K L -1.3750
91 I L 0.0000
92 S L -2.2330
93 R L -3.3486
94 V L 0.0000
95 E L -2.6454
96 A L -1.2632
97 E L -2.0797
98 D L 0.0000
99 V L -0.3207
100 G L 0.0000
101 V L 0.0114
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 N L -0.8312
108 N L -1.1273
109 E L -2.3163
114 D L -2.4718
115 P L -2.0645
116 Y L -0.7461
117 T L -0.3028
118 F L 0.2770
119 G L 0.0000
120 G L -0.3415
121 G L 0.0000
122 T L 0.0000
123 K L -0.5697
124 V L 0.0000
125 E L -0.2046
126 I L 0.0789
127 K L -1.3368
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Laboratory of Theory of Biopolymers 2018