Project name: query_structure

Status: done

Started: 2026-03-16 23:49:19
Settings
Chain sequence(s) A: INMPNMVGNMLMMVINMPNMVGNMLMMV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:21)
Show buried residues

Minimal score value
-0.5917
Maximal score value
3.0232
Average score
1.3032
Total score value
36.4907

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 I A 1.5029
2 N A 0.0450
3 M A 1.0245
4 P A 0.2254
5 N A -0.5917
6 M A 0.6775
7 V A 0.8170
8 G A 0.2155
9 N A 0.1540
10 M A 1.5106
11 L A 2.1711
12 M A 2.3217
13 M A 2.4229
14 V A 2.7684
15 I A 2.7302
16 N A 1.1473
17 M A 1.3513
18 P A 0.3520
19 N A -0.4974
20 M A 0.6765
21 V A 1.0185
22 G A 0.5045
23 N A 0.4862
24 M A 2.0241
25 L A 2.9577
26 M A 2.7049
27 M A 2.7469
28 V A 3.0232
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Laboratory of Theory of Biopolymers 2018