Project name: GSlinker_2

Status: done

Started: 2026-06-25 07:26:07
Settings
Chain sequence(s) A: GGGGSGGGGSGGGGS
B: GGGGSGGGGSGGGGS
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-1.7094
Maximal score value
0.0
Average score
-1.1544
Total score value
-34.6326

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.8713
2 G A -1.0689
3 G A -1.1472
4 G A -1.2478
5 S A -1.3560
6 G A -1.2471
7 G A -1.4979
8 G A 0.0000
9 G A -1.6524
10 S A -1.2677
11 G A -1.2332
12 G A -1.1907
13 G A -1.0823
14 G A -0.8926
15 S A -0.5373
1 G B -0.8870
2 G B -1.1135
3 G B -1.1704
4 G B -1.1939
5 S B -1.0785
6 G B -1.3355
7 G B -1.4402
8 G B -1.5080
9 G B -1.7094
10 S B -1.5122
11 G B -1.3925
12 G B -1.2374
13 G B -1.2031
14 G B -0.9710
15 S B -0.5876
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Laboratory of Theory of Biopolymers 2018