Project name: hiapp2

Status: done

Started: 2024-06-18 14:14:41
Settings
Chain sequence(s) A: KCNTATCATQRLANFLVHSSNNFGAILSSTNVGSNTY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-2.0847
Maximal score value
2.7007
Average score
0.232
Total score value
8.5851

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.0847
2 C A -1.6284
3 N A -1.8388
4 T A -0.8818
5 A A -0.5625
6 T A -0.5819
7 C A -0.9928
8 A A -1.3871
9 T A -0.6740
10 Q A -1.2154
11 R A -1.2994
12 L A 1.1332
13 A A 0.6383
14 N A 0.4055
15 F A 2.5989
16 L A 2.5658
17 V A 1.4611
18 H A 0.0227
19 S A 0.9529
20 S A 0.0340
21 N A -0.8557
22 N A 0.6015
23 F A 2.2772
24 G A 1.7924
25 A A 1.4195
26 I A 2.5340
27 L A 2.7007
28 S A 1.5266
29 S A 1.0494
30 T A 0.2737
31 N A -0.7966
32 V A 0.4935
33 G A -0.2994
34 S A -0.3579
35 N A -1.0491
36 T A -0.1443
37 Y A 0.7540
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Laboratory of Theory of Biopolymers 2018