| Chain sequence(s) |
A: LPNITILATGGTIAGGGDSATKSNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDDVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKTVFDTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQYD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:07)
[INFO] Main: Simulation completed successfully. (00:02:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | L | A | 0.5992 | |
| 2 | P | A | -0.0271 | |
| 3 | N | A | -1.1735 | |
| 4 | I | A | 0.0000 | |
| 5 | T | A | -1.7396 | |
| 6 | I | A | 0.0000 | |
| 7 | L | A | 0.0000 | |
| 8 | A | A | 0.0000 | |
| 9 | T | A | 0.0000 | |
| 10 | G | A | 0.0000 | |
| 11 | G | A | 0.0000 | |
| 12 | T | A | 0.0000 | |
| 13 | I | A | 0.0000 | |
| 14 | A | A | 0.0000 | |
| 15 | G | A | 0.0000 | |
| 16 | G | A | -1.0809 | |
| 17 | G | A | -1.7432 | |
| 18 | D | A | -2.3920 | |
| 19 | S | A | -1.5971 | |
| 20 | A | A | -0.7851 | |
| 21 | T | A | -1.1130 | |
| 22 | K | A | -2.3815 | |
| 23 | S | A | -1.8970 | |
| 24 | N | A | -2.0102 | |
| 25 | Y | A | -1.1846 | |
| 26 | T | A | -0.7057 | |
| 27 | A | A | -0.7496 | |
| 28 | G | A | -0.8651 | |
| 29 | K | A | -1.7040 | |
| 30 | V | A | -1.3512 | |
| 31 | G | A | -1.7137 | |
| 32 | V | A | 0.0000 | |
| 33 | E | A | -3.3761 | |
| 34 | N | A | -2.5711 | |
| 35 | L | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | N | A | -2.6271 | |
| 38 | A | A | -1.4381 | |
| 39 | V | A | 0.0000 | |
| 40 | P | A | -1.9526 | |
| 41 | Q | A | -2.2928 | |
| 42 | L | A | 0.0000 | |
| 43 | K | A | -3.1023 | |
| 44 | D | A | -2.7759 | |
| 45 | I | A | -1.0895 | |
| 46 | A | A | 0.0000 | |
| 47 | N | A | -1.8310 | |
| 48 | V | A | -1.3983 | |
| 49 | K | A | -2.6719 | |
| 50 | G | A | -2.4226 | |
| 51 | E | A | -2.5931 | |
| 52 | Q | A | -1.3373 | |
| 53 | V | A | -0.2708 | |
| 54 | V | A | 0.1067 | |
| 55 | N | A | -0.5329 | |
| 56 | I | A | -0.7529 | |
| 57 | G | A | -1.3080 | |
| 58 | S | A | 0.0000 | |
| 59 | Q | A | -2.3043 | |
| 60 | D | A | -2.5460 | |
| 61 | M | A | -1.8237 | |
| 62 | N | A | -2.0797 | |
| 63 | D | A | -2.3203 | |
| 64 | D | A | -2.7875 | |
| 65 | V | A | 0.0000 | |
| 66 | W | A | 0.0000 | |
| 67 | L | A | 0.0000 | |
| 68 | T | A | -1.0813 | |
| 69 | L | A | 0.0000 | |
| 70 | A | A | 0.0000 | |
| 71 | K | A | -1.5587 | |
| 72 | K | A | -1.2464 | |
| 73 | I | A | 0.0000 | |
| 74 | N | A | -1.4538 | |
| 75 | T | A | -1.6200 | |
| 76 | D | A | -2.4037 | |
| 77 | C | A | -2.4403 | |
| 78 | D | A | -3.1493 | |
| 79 | K | A | -3.0728 | |
| 80 | T | A | 0.0000 | |
| 81 | D | A | -2.4860 | |
| 82 | G | A | 0.0000 | |
| 83 | F | A | 0.0000 | |
| 84 | V | A | 0.0000 | |
| 85 | I | A | 0.0000 | |
| 86 | T | A | 0.0000 | |
| 87 | H | A | 0.0000 | |
| 88 | G | A | 0.0000 | |
| 89 | T | A | 0.0000 | |
| 90 | D | A | -1.2277 | |
| 91 | T | A | -1.0785 | |
| 92 | M | A | 0.0000 | |
| 93 | E | A | 0.0000 | |
| 94 | E | A | -0.4010 | |
| 95 | T | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | Y | A | 0.0000 | |
| 98 | F | A | 0.0000 | |
| 99 | L | A | 0.0000 | |
| 100 | D | A | 0.0000 | |
| 101 | L | A | 0.0000 | |
| 102 | T | A | 0.0000 | |
| 103 | V | A | 0.0000 | |
| 104 | K | A | -1.4588 | |
| 105 | C | A | 0.0000 | |
| 106 | D | A | -1.5248 | |
| 107 | K | A | -1.9786 | |
| 108 | P | A | 0.0000 | |
| 109 | V | A | 0.0000 | |
| 110 | V | A | 0.0000 | |
| 111 | M | A | 0.0000 | |
| 112 | V | A | 0.0000 | |
| 113 | G | A | 0.0000 | |
| 114 | A | A | 0.0000 | |
| 115 | M | A | 0.0000 | |
| 116 | R | A | -0.8410 | |
| 117 | P | A | 0.0000 | |
| 118 | S | A | -0.4737 | |
| 119 | T | A | -0.4932 | |
| 120 | S | A | -0.5130 | |
| 121 | M | A | 0.5532 | |
| 122 | S | A | 0.0623 | |
| 123 | A | A | 0.1288 | |
| 124 | D | A | 0.0616 | |
| 125 | G | A | 0.0000 | |
| 126 | P | A | 0.6508 | |
| 127 | F | A | 1.5526 | |
| 128 | N | A | 0.0000 | |
| 129 | L | A | 0.0000 | |
| 130 | Y | A | 0.6227 | |
| 131 | N | A | 0.0000 | |
| 132 | A | A | 0.0000 | |
| 133 | V | A | 0.0000 | |
| 134 | V | A | 0.0000 | |
| 135 | T | A | 0.0000 | |
| 136 | A | A | 0.0000 | |
| 137 | A | A | -0.8529 | |
| 138 | D | A | -1.6923 | |
| 139 | K | A | -2.2996 | |
| 140 | A | A | -1.3705 | |
| 141 | S | A | 0.0000 | |
| 142 | A | A | -1.7297 | |
| 143 | N | A | -1.9300 | |
| 144 | R | A | -1.4207 | |
| 145 | G | A | -1.0799 | |
| 146 | V | A | 0.0000 | |
| 147 | L | A | 0.0000 | |
| 148 | V | A | 0.0000 | |
| 149 | V | A | 0.0000 | |
| 150 | M | A | 0.0000 | |
| 151 | N | A | -0.8516 | |
| 152 | D | A | -0.8383 | |
| 153 | T | A | -0.5733 | |
| 154 | V | A | 0.0000 | |
| 155 | L | A | 0.0000 | |
| 156 | D | A | 0.0000 | |
| 157 | G | A | 0.0000 | |
| 158 | R | A | 0.0000 | |
| 159 | D | A | 0.0000 | |
| 160 | V | A | 0.0000 | |
| 161 | T | A | 0.0000 | |
| 162 | K | A | -1.0669 | |
| 163 | T | A | -1.0392 | |
| 164 | N | A | -1.4021 | |
| 165 | T | A | -0.8612 | |
| 166 | T | A | -0.9191 | |
| 167 | D | A | -1.2741 | |
| 168 | V | A | -0.6295 | |
| 169 | A | A | -0.9396 | |
| 170 | T | A | 0.0000 | |
| 171 | F | A | 0.0000 | |
| 172 | K | A | -1.2850 | |
| 173 | S | A | 0.0000 | |
| 174 | V | A | 0.0153 | |
| 175 | N | A | 0.1147 | |
| 176 | Y | A | 0.7768 | |
| 177 | G | A | 0.0158 | |
| 178 | P | A | -0.3457 | |
| 179 | L | A | 0.0000 | |
| 180 | G | A | 0.0000 | |
| 181 | Y | A | -0.1846 | |
| 182 | I | A | 0.0000 | |
| 183 | H | A | -2.3101 | |
| 184 | N | A | -2.4469 | |
| 185 | G | A | -2.0279 | |
| 186 | K | A | -2.6684 | |
| 187 | I | A | -1.7545 | |
| 188 | D | A | -2.2815 | |
| 189 | Y | A | -1.6527 | |
| 190 | Q | A | -2.2808 | |
| 191 | R | A | -2.5208 | |
| 192 | T | A | -1.5306 | |
| 193 | P | A | -0.9144 | |
| 194 | A | A | -0.9054 | |
| 195 | R | A | -1.7124 | |
| 196 | K | A | -2.1211 | |
| 197 | H | A | -1.7919 | |
| 198 | T | A | 0.0000 | |
| 199 | S | A | -1.9016 | |
| 200 | D | A | -2.4235 | |
| 201 | T | A | 0.0000 | |
| 202 | P | A | -1.2968 | |
| 203 | F | A | 0.0000 | |
| 204 | D | A | -1.9508 | |
| 205 | V | A | 0.0000 | |
| 206 | S | A | -1.8445 | |
| 207 | K | A | -2.5242 | |
| 208 | L | A | -2.1420 | |
| 209 | N | A | -2.8660 | |
| 210 | E | A | -3.2381 | |
| 211 | L | A | 0.0000 | |
| 212 | P | A | -1.6350 | |
| 213 | K | A | -2.3634 | |
| 214 | V | A | 0.0000 | |
| 215 | G | A | -0.2481 | |
| 216 | I | A | 0.8054 | |
| 217 | V | A | 0.0000 | |
| 218 | Y | A | 1.3705 | |
| 219 | N | A | 0.0000 | |
| 220 | Y | A | 0.7592 | |
| 221 | A | A | -0.0375 | |
| 222 | N | A | -1.2811 | |
| 223 | A | A | 0.0000 | |
| 224 | S | A | -0.1362 | |
| 225 | D | A | -0.3741 | |
| 226 | L | A | 0.8330 | |
| 227 | P | A | 0.4190 | |
| 228 | A | A | 0.0000 | |
| 229 | K | A | -0.8472 | |
| 230 | A | A | -0.4525 | |
| 231 | L | A | -0.4819 | |
| 232 | V | A | -0.8222 | |
| 233 | D | A | -1.6901 | |
| 234 | A | A | -1.1509 | |
| 235 | G | A | -1.3375 | |
| 236 | Y | A | -1.2182 | |
| 237 | D | A | -1.8381 | |
| 238 | G | A | 0.0000 | |
| 239 | I | A | 0.0000 | |
| 240 | V | A | 0.0000 | |
| 241 | S | A | 0.0000 | |
| 242 | A | A | 0.0000 | |
| 243 | G | A | 0.0000 | |
| 244 | V | A | 0.2724 | |
| 245 | G | A | -0.6972 | |
| 246 | N | A | -1.2315 | |
| 247 | G | A | 0.0000 | |
| 248 | N | A | -1.0585 | |
| 249 | L | A | 0.0000 | |
| 250 | Y | A | -0.7097 | |
| 251 | K | A | -2.2290 | |
| 252 | T | A | -1.3968 | |
| 253 | V | A | 0.0000 | |
| 254 | F | A | -1.1714 | |
| 255 | D | A | -2.1208 | |
| 256 | T | A | 0.0000 | |
| 257 | L | A | 0.0000 | |
| 258 | A | A | 0.0000 | |
| 259 | T | A | -1.3536 | |
| 260 | A | A | 0.0000 | |
| 261 | A | A | -1.3518 | |
| 262 | K | A | -2.6043 | |
| 263 | N | A | -2.2690 | |
| 264 | G | A | -2.2177 | |
| 265 | T | A | -1.4325 | |
| 266 | A | A | -1.2592 | |
| 267 | V | A | 0.0000 | |
| 268 | V | A | 0.0000 | |
| 269 | R | A | 0.0000 | |
| 270 | S | A | 0.0000 | |
| 271 | S | A | 0.0000 | |
| 272 | R | A | -1.0256 | |
| 273 | V | A | -0.2181 | |
| 274 | P | A | -0.4740 | |
| 275 | T | A | -0.2300 | |
| 276 | G | A | -0.4300 | |
| 277 | A | A | -0.5116 | |
| 278 | T | A | 0.0000 | |
| 279 | T | A | -1.2026 | |
| 280 | Q | A | -2.2097 | |
| 281 | D | A | -2.8859 | |
| 282 | A | A | -2.4148 | |
| 283 | E | A | -2.9082 | |
| 284 | V | A | 0.0000 | |
| 285 | D | A | -3.1723 | |
| 286 | D | A | 0.0000 | |
| 287 | A | A | -1.7145 | |
| 288 | K | A | -2.2826 | |
| 289 | Y | A | -1.3025 | |
| 290 | G | A | -1.4333 | |
| 291 | F | A | 0.0000 | |
| 292 | V | A | 0.0000 | |
| 293 | A | A | 0.0000 | |
| 294 | S | A | 0.0000 | |
| 295 | G | A | -0.6588 | |
| 296 | T | A | -0.3062 | |
| 297 | L | A | 0.0000 | |
| 298 | N | A | -0.6624 | |
| 299 | P | A | 0.0000 | |
| 300 | Q | A | -0.5942 | |
| 301 | K | A | 0.0000 | |
| 302 | A | A | 0.0000 | |
| 303 | R | A | -0.5521 | |
| 304 | V | A | 0.0000 | |
| 305 | L | A | 0.0000 | |
| 306 | L | A | 0.0000 | |
| 307 | Q | A | 0.0000 | |
| 308 | L | A | 0.0000 | |
| 309 | A | A | 0.0000 | |
| 310 | L | A | 0.0000 | |
| 311 | T | A | -1.0653 | |
| 312 | Q | A | -1.5782 | |
| 313 | T | A | -1.7694 | |
| 314 | K | A | -2.7668 | |
| 315 | D | A | -2.5192 | |
| 316 | P | A | -1.9243 | |
| 317 | Q | A | -2.3486 | |
| 318 | Q | A | -2.4672 | |
| 319 | I | A | 0.0000 | |
| 320 | Q | A | -1.9112 | |
| 321 | Q | A | -2.3402 | |
| 322 | I | A | 0.0000 | |
| 323 | F | A | 0.0000 | |
| 324 | N | A | -2.1430 | |
| 325 | Q | A | -1.9045 | |
| 326 | Y | A | -1.4185 | |
| 401 | D | A | -0.9420 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine