Project name: G4S4 x4-141VHH

Status: done

Started: 2025-11-18 01:25:06
Settings
Chain sequence(s) A: GGGGSGGGGSGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCAASLEHVAIGWFRQAPGKEREGVSCISSSGGHIHYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTAVYYCAAAVSYWECYDKLDYWGQGTLVTVSSPP
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:53)
Show buried residues

Minimal score value
-2.404
Maximal score value
1.7625
Average score
-0.3533
Total score value
-49.8112

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.5519
2 G A -0.6371
3 G A -0.6377
4 G A -0.5915
5 S A -0.3832
6 G A -0.5899
7 G A -0.6358
8 G A -0.6361
9 G A -0.5901
10 S A -0.3826
11 G A -0.5906
12 G A -0.6374
13 G A -0.6372
14 G A -0.5913
15 S A -0.3858
16 G A -0.5902
17 G A -0.6357
18 G A -0.6371
19 G A -0.5911
20 S A -0.6287
21 E A -1.7938
22 V A -0.1379
23 Q A -0.8436
24 L A 0.0000
25 V A 1.7377
26 E A 0.1073
27 S A -0.2435
28 G A -0.3735
29 G A -0.2780
30 G A 0.0587
31 L A 1.5105
32 V A 0.0000
33 Q A -1.2406
34 P A -0.5346
35 G A -0.5397
36 G A -0.1721
37 S A -0.1818
38 L A -0.1257
39 R A -1.8479
40 L A 0.0000
41 S A -0.0135
42 C A 0.0000
43 A A 0.0290
44 A A -0.0202
45 S A -0.0949
46 L A 0.0866
47 E A -1.8978
48 H A -1.2188
49 V A 0.0000
50 A A 0.0000
51 I A 0.0000
52 G A 0.0000
53 W A 0.0000
54 F A 0.2172
55 R A 0.0000
56 Q A -0.7728
57 A A -0.1471
58 P A -0.3377
59 G A -0.8147
60 K A -2.1208
61 E A -2.4040
62 R A -2.0057
63 E A -1.0246
64 G A -0.2015
65 V A 0.0000
66 S A 0.0000
67 C A 0.0000
68 I A 0.0000
69 S A 0.0000
70 S A 0.0000
71 S A -0.2437
72 G A -0.2931
73 G A -0.6754
74 H A -0.9144
75 I A 0.5056
76 H A -0.7661
77 Y A 0.1667
78 A A -0.2513
79 D A -1.8137
80 S A -0.4664
81 V A 0.0000
82 K A -1.7846
83 G A -0.8304
84 R A -0.3965
85 F A 0.0000
86 T A -0.0458
87 I A 0.0000
88 S A -0.1614
89 R A -0.3669
90 D A -0.7477
91 N A -1.1963
92 S A -0.7007
93 K A -1.7995
94 N A -0.7730
95 T A 0.0000
96 V A 0.0000
97 Y A 0.1444
98 L A 0.0000
99 Q A -0.6084
100 M A 0.0000
101 N A -0.5624
102 S A -0.2959
103 L A 0.0000
104 R A -1.8334
105 A A -0.6032
106 E A -1.8095
107 D A 0.0000
108 T A -0.0176
109 A A 0.0000
110 V A 0.7301
111 Y A 0.0000
112 Y A 0.2105
113 C A 0.0000
114 A A 0.0000
115 A A 0.0000
116 A A 0.0000
117 V A 1.7625
118 S A 0.3973
119 Y A 0.9582
120 W A 1.1398
121 E A -0.7940
122 C A 0.0000
123 Y A 0.3007
124 D A -1.9884
125 K A -1.9945
126 L A -0.4541
127 D A -1.6764
128 Y A 0.1960
129 W A 0.4746
130 G A -0.1973
131 Q A -1.2247
132 G A -0.2753
133 T A 0.2575
134 L A 1.6181
135 V A 0.0000
136 T A 0.1622
137 V A 0.0000
138 S A -0.1518
139 S A -0.2800
140 P A -0.3397
141 P A -0.3011
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018