| Chain sequence(s) |
H: EVQLVETGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWYAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARHEWGFGMDVWGQGTTVTVSS
L: DVVMTQSPLSLSVTLGQPASISCRSSLSLVYGDENTYLNWFQQRPGQSPRRLLYKVSDRDSGVPDRFSGSGSGTDFTLKISRVEADDVGVYYCMQGTHWPYTFGQGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:08)
[INFO] Main: Simulation completed successfully. (00:01:10)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -1.3901 | |
| 2 | V | H | 0.2398 | |
| 3 | Q | H | -0.1662 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.9647 | |
| 6 | E | H | 0.0000 | |
| 7 | T | H | -0.2305 | |
| 8 | G | H | -0.6804 | |
| 9 | G | H | -0.2244 | |
| 11 | G | H | 0.4770 | |
| 12 | V | H | 1.4498 | |
| 13 | V | H | 0.0000 | |
| 14 | Q | H | -1.1321 | |
| 15 | P | H | -1.5340 | |
| 16 | G | H | -1.9837 | |
| 17 | R | H | -2.5485 | |
| 18 | S | H | -1.7468 | |
| 19 | L | H | -1.0634 | |
| 20 | R | H | -1.6825 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | 0.0000 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.0797 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.5113 | |
| 27 | G | H | -0.5496 | |
| 28 | F | H | -0.0615 | |
| 29 | T | H | 0.0132 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.6081 | |
| 36 | S | H | -0.0412 | |
| 37 | Y | H | 0.3860 | |
| 38 | A | H | 0.0000 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.9002 | |
| 45 | A | H | -1.2879 | |
| 46 | P | H | -1.1667 | |
| 47 | G | H | -1.4585 | |
| 48 | K | H | -2.3886 | |
| 49 | G | H | -1.6018 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.3881 | |
| 52 | W | H | 0.0000 | |
| 53 | Y | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.4238 | |
| 58 | Y | H | -0.0152 | |
| 59 | D | H | -1.0357 | |
| 62 | G | H | -1.0122 | |
| 63 | S | H | -1.0290 | |
| 64 | N | H | -1.3011 | |
| 65 | K | H | -0.8493 | |
| 66 | Y | H | -0.1850 | |
| 67 | Y | H | -0.6973 | |
| 68 | A | H | 0.0000 | |
| 69 | D | H | -2.6779 | |
| 70 | S | H | -1.8361 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.5792 | |
| 74 | G | H | -1.7764 | |
| 75 | R | H | -1.5627 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.8730 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.5769 | |
| 80 | R | H | 0.0000 | |
| 81 | D | H | -1.4787 | |
| 82 | N | H | -1.6524 | |
| 83 | S | H | -1.5521 | |
| 84 | K | H | -2.3788 | |
| 85 | N | H | -1.7906 | |
| 86 | T | H | -0.9429 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.3601 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.1821 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.7196 | |
| 93 | S | H | -1.6206 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.3173 | |
| 96 | A | H | -1.5882 | |
| 97 | E | H | -2.2159 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6431 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.1695 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | -0.1631 | |
| 107 | H | H | 0.0000 | |
| 108 | E | H | 0.4518 | |
| 109 | W | H | 1.2179 | |
| 110 | G | H | 0.7830 | |
| 113 | F | H | 0.6858 | |
| 114 | G | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | -0.5315 | |
| 117 | V | H | -0.0470 | |
| 118 | W | H | -0.1197 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.1488 | |
| 121 | G | H | -0.4374 | |
| 122 | T | H | -0.1289 | |
| 123 | T | H | 0.1653 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.1238 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.2381 | |
| 128 | S | H | -0.2936 | |
| 1 | D | L | -1.3780 | |
| 2 | V | L | 0.0000 | |
| 3 | V | L | 1.0468 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.4507 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.2475 | |
| 8 | P | L | 0.1758 | |
| 9 | L | L | 0.8691 | |
| 10 | S | L | -0.0609 | |
| 11 | L | L | -0.1387 | |
| 12 | S | L | -0.8906 | |
| 13 | V | L | 0.0000 | |
| 14 | T | L | -1.0539 | |
| 15 | L | L | -0.3857 | |
| 16 | G | L | -1.2432 | |
| 17 | Q | L | -1.7153 | |
| 18 | P | L | -1.4685 | |
| 19 | A | L | 0.0000 | |
| 20 | S | L | -0.6288 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.8009 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -1.9224 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | 0.1252 | |
| 27 | L | L | 0.7209 | |
| 28 | S | L | 0.3783 | |
| 29 | L | L | 0.0000 | |
| 30 | V | L | 0.4620 | |
| 31 | Y | L | 0.3265 | |
| 32 | G | L | -0.8817 | |
| 34 | D | L | -1.9167 | |
| 35 | E | L | -2.0693 | |
| 36 | N | L | -1.0973 | |
| 37 | T | L | -0.3301 | |
| 38 | Y | L | 0.2127 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | F | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.9682 | |
| 45 | R | L | -1.4183 | |
| 46 | P | L | -0.9790 | |
| 47 | G | L | -1.4693 | |
| 48 | Q | L | -2.1137 | |
| 49 | S | L | -1.3850 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -1.2451 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | L | L | 0.0000 | |
| 55 | Y | L | -0.3644 | |
| 56 | K | L | -0.4148 | |
| 57 | V | L | 0.0000 | |
| 65 | S | L | -0.9358 | |
| 66 | D | L | -1.2179 | |
| 67 | R | L | -1.7493 | |
| 68 | D | L | -1.0967 | |
| 69 | S | L | -0.8836 | |
| 70 | G | L | -1.0034 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.2813 | |
| 74 | D | L | -2.2132 | |
| 75 | R | L | 0.0000 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.2018 | |
| 78 | G | L | -0.8616 | |
| 79 | S | L | -0.8153 | |
| 80 | G | L | -1.1156 | |
| 83 | S | L | -0.8272 | |
| 84 | G | L | -0.2462 | |
| 85 | T | L | -0.8606 | |
| 86 | D | L | -1.6778 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.9613 | |
| 89 | L | L | 0.0000 | |
| 90 | K | L | -1.2500 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.7141 | |
| 93 | R | L | -2.1887 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.0145 | |
| 96 | A | L | -0.8560 | |
| 97 | D | L | -1.4471 | |
| 98 | D | L | 0.0000 | |
| 99 | V | L | -0.1823 | |
| 100 | G | L | 0.0000 | |
| 101 | V | L | -0.1980 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | M | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | G | L | 0.1988 | |
| 108 | T | L | 0.0000 | |
| 109 | H | L | -0.1179 | |
| 114 | W | L | 0.0822 | |
| 115 | P | L | -0.4560 | |
| 116 | Y | L | 0.0000 | |
| 117 | T | L | -0.1885 | |
| 118 | F | L | -0.0460 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -0.9329 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.6330 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.4016 | |
| 126 | I | L | -0.5510 | |
| 127 | K | L | -1.6294 |