Project name: d8db474ec2d85db

Status: done

Started: 2025-06-03 05:09:28
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGSSVKVSCKASGYTFTDYAMHWVRQAPGQGLEWMGLISIYSDHTNYNQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCGRNNYGNYGWYFDVWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCSASSSVSYMHWYQQKPGQAPRLLIYDTSKLASGIPARFSGSGSGTDYTLTISSLEPEDFAVYYCFQGSGYPYTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:48)
Show buried residues

Minimal score value
-3.1728
Maximal score value
1.1837
Average score
-0.5212
Total score value
-118.3096

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3337
2 V H -0.6589
3 Q H -0.7573
4 L H 0.0000
5 V H 0.6006
6 Q H 0.0000
7 S H -0.5325
8 G H -0.5997
9 A H -0.0496
11 E H -0.0692
12 V H 0.9035
13 K H -0.9633
14 K H -2.2165
15 P H -2.1776
16 G H -1.6700
17 S H -1.3300
18 S H -1.3882
19 V H 0.0000
20 K H -1.9095
21 V H 0.0000
22 S H -0.4258
23 C H 0.0000
24 K H -0.3971
25 A H 0.0000
26 S H -0.5200
27 G H -0.8419
28 Y H -0.5305
29 T H -0.4892
30 F H 0.0000
35 T H -0.6543
36 D H -1.2380
37 Y H -0.1892
38 A H 0.0000
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5576
45 A H -0.9751
46 P H -0.8181
47 G H -1.2090
48 Q H -1.8443
49 G H -1.2857
50 L H 0.0000
51 E H -0.8752
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 L H 0.0000
56 I H 0.0000
57 S H -0.7465
58 I H 0.0000
59 Y H 0.1847
62 S H -0.6365
63 D H -1.6615
64 H H -1.6076
65 T H -1.1002
66 N H -0.9033
67 Y H -0.9818
68 N H -1.6404
69 Q H -2.6644
70 K H -2.7039
71 F H 0.0000
72 Q H -2.2995
74 G H -1.5287
75 R H -1.4178
76 V H 0.0000
77 T H -0.7320
78 I H 0.0000
79 T H -0.6336
80 A H -0.8110
81 D H -1.2607
82 K H -1.2532
83 S H -0.8621
84 T H -0.7325
85 S H -0.8719
86 T H -0.5582
87 A H 0.0000
88 Y H -0.4456
89 M H 0.0000
90 E H -1.1600
91 L H 0.0000
92 S H -1.1294
93 S H -1.2970
94 L H 0.0000
95 R H -3.1728
96 S H -2.3945
97 E H -2.5536
98 D H 0.0000
99 T H -0.8787
100 A H 0.0000
101 V H 0.1958
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 G H 0.0000
106 R H 0.0000
107 N H 0.0000
108 N H 0.0375
109 Y H 0.4609
110 G H 0.1046
111 N H -0.4901
112A Y H 0.8002
112 G H 0.0000
113 W H 0.5170
114 Y H 0.0000
115 F H 0.0000
116 D H -0.3873
117 V H -0.3191
118 W H -0.2622
119 G H 0.0000
120 Q H -1.1883
121 G H -0.5125
122 T H 0.0000
123 T H 0.0434
124 V H 0.0000
125 T H -0.3057
126 V H 0.0000
127 S H -0.9789
128 S H -1.0456
1 E L -1.2898
2 I L 0.1458
3 V L 1.1837
4 L L 0.0000
5 T L -0.1915
6 Q L 0.0000
7 S L -0.4738
8 P L -0.3407
9 A L -0.4422
10 T L -0.4600
11 L L -0.1213
12 S L -0.2269
13 L L -0.5100
14 S L -0.9366
15 P L -1.2730
16 G L -1.6464
17 E L -2.0715
18 R L -2.4765
19 A L 0.0000
20 T L -0.6264
21 L L 0.0000
22 S L -0.5837
23 C L 0.0000
24 S L -0.7798
25 A L 0.0000
26 S L -0.1522
27 S L -0.5002
28 S L -0.7613
29 V L 0.0000
37 S L -0.0815
38 Y L 0.2587
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.4159
46 P L -0.9686
47 G L -1.4056
48 Q L -2.0672
49 A L -1.3407
50 P L 0.0000
51 R L -1.5401
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1523
56 D L 0.0000
57 T L -0.3026
65 S L -0.5777
66 K L -0.8197
67 L L -0.0198
68 A L 0.0000
69 S L -0.4709
70 G L -0.4869
71 I L 0.0000
72 P L -0.2261
74 A L -0.1290
75 R L -0.7516
76 F L 0.0000
77 S L -0.4422
78 G L -0.4276
79 S L -0.8177
80 G L -1.0126
83 S L -1.0362
84 G L -1.0268
85 T L -1.2947
86 D L -2.1565
87 Y L 0.0000
88 T L -0.6691
89 L L 0.0000
90 T L -0.6410
91 I L 0.0000
92 S L -1.4584
93 S L -1.6817
94 L L 0.0000
95 E L -1.6404
96 P L -1.1540
97 E L -1.9410
98 D L 0.0000
99 F L -0.3387
100 A L 0.0000
101 V L -0.2458
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 F L 0.0000
106 Q L 0.0000
107 G L 0.0000
108 S L 0.2286
109 G L -0.1683
114 Y L 0.0556
115 P L -0.6415
116 Y L 0.0000
117 T L -0.0187
118 F L 0.0000
119 G L 0.0000
120 Q L -1.2806
121 G L 0.0000
122 T L 0.0000
123 K L -0.8963
124 L L 0.0000
125 E L -0.0292
126 I L 0.7776
127 K L -0.8378
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Laboratory of Theory of Biopolymers 2018