Project name: My project [mutate: VT51A, FY52A]

Status: done

Started: 2024-06-18 21:11:11
Settings
Chain sequence(s) A: MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVLVVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGILHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESGMQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VT51A,FY52A
Energy difference between WT (input) and mutated protein (by FoldX) -0.161676 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:54)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:56)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:31)
Show buried residues

Minimal score value
-3.0637
Maximal score value
3.7012
Average score
-0.3043
Total score value
-71.2081

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.1397
2 D A -1.5045
3 P A -0.7619
4 G A -0.4774
5 L A 0.4091
6 Q A -1.1860
7 Q A -1.1287
8 A A -0.3019
9 L A 0.7317
10 N A -0.4723
11 G A -0.2522
12 M A 0.7071
13 A A 0.0340
14 P A -0.5688
15 P A -1.0389
16 G A -1.5418
17 D A -2.1357
18 T A -0.8983
19 A A -0.1874
20 M A 0.9386
21 H A 0.3439
22 V A 1.3437
23 P A 0.3645
24 A A 0.2153
25 G A 0.0823
26 S A 0.3637
27 V A 1.5555
28 A A 0.7096
29 S A 0.0482
30 H A -0.2215
31 L A 0.6983
32 G A -0.6342
33 T A -0.6521
34 T A -0.0424
35 S A 0.1948
36 R A -0.3964
37 S A 0.8449
38 Y A 2.3597
39 F A 2.7407
40 Y A 2.6397
41 L A 2.9472
42 T A 2.2818
43 T A 2.1876
44 A A 2.1658
45 T A 2.0992
46 L A 2.8419
47 A A 2.2286
48 L A 2.6730
49 C A 2.8760
50 L A 3.3331
51 T A 2.7303 mutated: VT51A
52 Y A 3.1466 mutated: FY52A
53 T A 2.8338
54 V A 3.6740
55 A A 2.9006
56 T A 2.9739
57 I A 3.7012
58 M A 3.5419
59 V A 3.1992
60 L A 2.3007
61 V A 2.2769
62 V A 1.8111
63 Q A -0.5373
64 R A -1.4213
65 T A -0.9128
66 D A -2.2128
67 S A -1.6484
68 I A -1.3665
69 P A -1.2669
70 N A -1.9930
71 S A -1.8483
72 P A -1.8626
73 D A -2.3522
74 N A -1.4503
75 V A 0.2753
76 P A -0.4105
77 L A -0.5276
78 K A -1.8129
79 G A -1.6479
80 G A -2.0026
81 N A -2.1940
82 C A -1.7850
83 S A -1.5840
84 E A -2.5097
85 D A -1.8934
86 L A -0.8371
87 L A 0.0173
88 C A 0.0000
89 I A -0.5589
90 L A 0.0000
91 K A -1.1873
92 R A -1.7943
93 A A -0.7707
94 P A -0.6520
95 F A -0.2919
96 K A -1.9445
97 K A -1.4512
98 S A 0.0000
99 W A 0.0000
100 A A 0.0000
101 Y A 0.0000
102 L A 0.0000
103 Q A -1.0212
104 V A 0.0000
105 A A -1.4836
106 K A -1.6913
107 H A -1.3495
108 L A -0.0333
109 N A -1.6330
110 K A -2.4276
111 T A -1.7932
112 K A -2.3254
113 L A 0.0000
114 S A -1.5731
115 W A 0.0000
116 N A -2.4394
117 K A -3.0637
118 D A -2.8943
119 G A -1.6540
120 I A -1.2465
121 L A 0.0000
122 H A -1.3075
123 G A 0.0000
124 V A 0.0000
125 R A -1.2268
126 Y A -1.5683
127 Q A -2.5045
128 D A -2.5453
129 G A -1.9060
130 N A -1.7648
131 L A 0.0000
132 V A 0.0000
133 I A 0.0000
134 Q A -0.2289
135 F A 0.0766
136 P A -0.1723
137 G A 0.0000
138 L A 1.0448
139 Y A 0.0000
140 F A 1.5517
141 I A 0.0000
142 I A 0.0000
143 C A 0.0000
144 Q A -0.6844
145 L A 0.0000
146 Q A -0.2349
147 F A 0.0000
148 L A 0.2984
149 V A 0.0000
150 Q A -1.9263
151 C A 0.0000
152 P A -2.3066
153 N A -2.7968
154 N A -2.6091
155 S A -2.0769
156 V A 0.0000
157 D A -1.6298
158 L A 0.0000
159 K A -0.9624
160 L A 0.0000
161 E A -0.9099
162 L A 0.0000
163 L A 0.0000
164 I A 0.0000
165 N A -2.3668
166 K A -2.4983
167 H A -1.7045
168 I A -0.2125
169 K A -1.6384
170 K A -1.3017
171 Q A -0.9044
172 A A -0.1223
173 L A 0.6186
174 V A 0.3942
175 T A -0.5664
176 V A -0.3219
177 C A 0.0000
178 E A -2.8124
179 S A -2.3335
180 G A -1.9071
181 M A -2.0115
182 Q A -2.4394
183 T A -2.2096
184 K A -2.5620
185 H A -1.9011
186 V A -0.2367
187 Y A 0.7109
188 Q A 0.1167
189 N A -0.7822
190 L A 0.0000
191 S A -0.2987
192 Q A 0.0323
193 F A 1.2172
194 L A 1.0318
195 L A 1.9583
196 D A 0.8827
197 Y A 0.9769
198 L A 0.0000
199 Q A -0.4002
200 V A 0.6426
201 N A -0.9631
202 T A 0.0000
203 T A -1.4788
204 I A 0.0000
205 S A -0.8894
206 V A 0.0000
207 N A -0.9995
208 V A 0.0000
209 D A -2.4590
210 T A -1.5779
211 F A -1.3804
212 Q A -1.6804
213 Y A -0.3346
214 I A 0.0000
215 D A 0.0000
216 T A -0.4580
217 S A -0.1658
218 T A 0.0480
219 F A 0.2863
220 P A 0.0544
221 L A 0.7685
222 E A -0.7351
223 N A 0.0000
224 V A 0.0000
225 L A 0.0000
226 S A 0.0000
227 I A 0.0000
228 F A 0.4530
229 L A 0.0000
230 Y A 1.0403
231 S A 0.0893
232 N A -0.8872
233 S A -1.2811
234 D A -2.0408
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018