Project name: VHH1_5

Status: done

Started: 2024-06-10 13:13:19
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Chain sequence(s) H: QVQLQESGGGLVQPGGSLRLSCVLSNGIFSTYGMNWYRQAPGKQREFVASITSSGSTNYSPSVKGRFTISRENAKSTVNLQMNNLNPEDTAVYYCNTWSTWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:21)
Show buried residues

Minimal score value
-2.9772
Maximal score value
1.2677
Average score
-0.6999
Total score value
-77.686

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6695
2 V H -1.0708
3 Q H -1.9111
4 L H 0.0000
5 Q H -1.4328
6 E H 0.0000
7 S H -0.9928
8 G H -1.1796
9 G H -0.6350
11 G H 0.1174
12 L H 1.1528
13 V H 0.1051
14 Q H -1.3371
15 P H -1.7088
16 G H -1.6907
17 G H -1.1205
18 S H -1.3174
19 L H -0.9607
20 R H -2.0734
21 L H 0.0000
22 S H -0.6851
23 C H 0.0000
24 V H -0.0772
25 L H 0.0000
26 S H -1.2620
27 N H -1.6188
28 G H -0.6948
29 I H 0.9159
30 F H 0.0000
35 S H -0.3256
36 T H 0.2846
37 Y H 0.9368
38 G H 0.2539
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 Y H 0.0000
43 R H 0.0000
44 Q H -1.6571
45 A H 0.0000
46 P H -1.4637
47 G H -1.7946
48 K H -2.9772
49 Q H -2.7734
50 R H -2.1356
51 E H -1.5733
52 F H -0.1756
53 V H 0.0000
54 A H 0.0000
55 S H -0.3111
56 I H 0.0000
57 T H -0.5226
58 S H -0.5453
59 S H -0.6507
63 G H -0.9449
64 S H -0.7986
65 T H -0.9079
66 N H -1.5749
67 Y H -1.0391
68 S H -0.7911
69 P H -1.0337
70 S H -1.0356
71 V H 0.0000
72 K H -2.2229
74 G H -1.6255
75 R H -1.6125
76 F H 0.0000
77 T H -1.0027
78 I H 0.0000
79 S H -0.5901
80 R H -1.1826
81 E H -1.5515
82 N H -1.5700
83 A H -1.3691
84 K H -2.0231
85 S H -0.9759
86 T H -0.7931
87 V H 0.0000
88 N H -0.7732
89 L H 0.0000
90 Q H -1.2073
91 M H 0.0000
92 N H -1.6684
93 N H -2.1106
94 L H 0.0000
95 N H -1.8223
96 P H -1.5601
97 E H -2.1192
98 D H 0.0000
99 T H -0.7176
100 A H 0.0000
101 V H -0.3018
102 Y H 0.0000
103 Y H -0.2721
104 C H 0.0000
105 N H 0.0000
106 T H 0.0000
107 W H 1.2677
116 S H 0.5479
117 T H 0.2743
118 W H 0.1445
119 G H -0.8237
120 Q H -1.5024
121 G H -0.8682
122 T H -0.8545
123 Q H -0.6096
124 V H 0.0000
125 T H -0.1057
126 V H 0.0000
127 S H -0.6146
128 S H -0.7669
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Laboratory of Theory of Biopolymers 2018