Project name: d931dcdf81eb15d

Status: done

Started: 2025-06-03 04:58:35
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFKSYEMHWVRQAPGQGLEWMGRINPSVGSTWYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGKREGGTEYLRKWGQGTLVTVSS
L: EIVLTQSPGTLSLSPGERATLSCRASQSVASSYLAWYQQKPGQAPRLLIYGASNRHTGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYHNAITFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:46)
Show buried residues

Minimal score value
-3.1425
Maximal score value
1.2727
Average score
-0.6345
Total score value
-144.6569

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3750
2 V H -0.9210
3 Q H -1.2192
4 L H 0.0000
5 V H 0.2649
6 Q H 0.0000
7 S H -0.4147
8 G H -0.3844
9 A H 0.4498
11 E H 0.3397
12 V H 1.2401
13 K H -0.7927
14 K H -2.1401
15 P H -2.2821
16 G H -1.6366
17 A H -1.2583
18 S H -1.4373
19 V H 0.0000
20 K H -1.9879
21 V H 0.0000
22 S H -0.4997
23 C H 0.0000
24 K H -0.6955
25 A H 0.0000
26 S H -0.7272
27 G H -0.9253
28 Y H -0.4851
29 T H -0.4146
30 F H 0.0000
35 K H -1.1781
36 S H -1.0904
37 Y H -0.9455
38 E H -1.0574
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4809
45 A H -0.8921
46 P H -0.9134
47 G H -1.2095
48 Q H -1.7281
49 G H -1.0807
50 L H 0.0000
51 E H -0.7892
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 R H -0.0184
56 I H 0.0000
57 N H -0.1975
58 P H 0.0000
59 S H -0.0410
62 V H 1.2727
63 G H 0.1004
64 S H 0.3637
65 T H 0.5351
66 W H 0.8585
67 Y H -0.2504
68 A H 0.0000
69 Q H -2.5384
70 K H -2.7150
71 F H 0.0000
72 Q H -2.2472
74 G H -1.6206
75 R H -1.5073
76 V H 0.0000
77 T H -0.6302
78 M H 0.0000
79 T H -0.5455
80 R H -0.9581
81 D H -1.1593
82 T H -0.9108
83 S H -0.5660
84 T H -0.6217
85 S H -0.9198
86 T H 0.0000
87 V H 0.0000
88 Y H -0.5130
89 M H 0.0000
90 E H -1.4517
91 L H 0.0000
92 S H -1.2221
93 S H -1.2968
94 L H 0.0000
95 R H -3.1425
96 S H -2.3929
97 E H -2.6054
98 D H 0.0000
99 T H -0.6875
100 A H 0.0000
101 V H 0.5899
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 K H -1.6093
109 R H -2.2510
110 E H -2.2322
111 G H -1.5563
112A G H -1.3087
112 T H -1.2253
113 E H -1.1900
114 Y H 0.0000
115 L H 0.0000
116 R H -1.1540
117 K H -1.1230
118 W H 0.0000
119 G H 0.0000
120 Q H -1.2394
121 G H -0.3846
122 T H 0.0000
123 L H 1.0299
124 V H 0.0000
125 T H 0.0031
126 V H 0.0000
127 S H -0.9406
128 S H -1.2445
1 E L -1.9149
2 I L 0.0000
3 V L 0.6625
4 L L 0.0000
5 T L -0.7139
6 Q L -0.8333
7 S L -0.9711
8 P L -0.6856
9 G L -0.9782
10 T L -0.8077
11 L L -0.2961
12 S L -0.2602
13 L L -0.3783
14 S L -0.7795
15 P L -1.1071
16 G L -1.6748
17 E L -2.2278
18 R L -2.8773
19 A L 0.0000
20 T L -0.6295
21 L L 0.0000
22 S L -0.9549
23 C L 0.0000
24 R L -2.3503
25 A L 0.0000
26 S L -1.0288
27 Q L -1.7198
28 S L -1.3437
29 V L 0.0000
30 A L -0.3490
36 S L -0.4186
37 S L -0.3537
38 Y L -0.2324
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.0735
46 P L -0.8883
47 G L -1.2854
48 Q L -1.7093
49 A L -1.1419
50 P L 0.0000
51 R L -0.9375
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.5260
56 G L -0.4605
57 A L 0.0000
65 S L -1.0091
66 N L -1.4350
67 R L -1.7950
68 H L -1.2255
69 T L -0.7249
70 G L -0.9050
71 I L 0.0000
72 P L -1.3027
74 D L -2.3643
75 R L -1.9495
76 F L 0.0000
77 S L -1.0462
78 G L -0.6487
79 S L -0.7445
80 G L -1.0045
83 S L -0.9772
84 G L -1.1751
85 T L -1.7429
86 D L -2.0898
87 F L 0.0000
88 T L -0.7637
89 L L 0.0000
90 T L -0.7967
91 I L 0.0000
92 S L -2.1765
93 R L -2.8657
94 L L 0.0000
95 E L -1.4974
96 P L -0.5586
97 E L -1.0312
98 D L 0.0000
99 F L -0.0307
100 A L 0.0000
101 V L -0.4360
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 H L -1.1304
114 N L -1.7829
115 A L -1.0725
116 I L 0.0000
117 T L -0.2791
118 F L 0.0000
119 G L 0.0000
120 G L -0.6765
121 G L -0.8930
122 T L 0.0000
123 K L -1.1802
124 V L 0.0000
125 E L -0.0535
126 I L 0.8868
127 K L -0.8006
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018