Project name: query_structure

Status: done

Started: 2026-03-16 21:41:28
Settings
Chain sequence(s) A: MLPAPKNLVVSRVTEDSARLSWTAPDAAFDSFAIYYLESYPEGEAIVLTVPGSERSYDLTGLKPGTEYWVGIDGVKGGTWSSPLSAIFTTGGGGSGGGGSGGGGSGGGGSLPAPKNLVVSRVTEDSARLSWTAPYAAFDSFAISYRERSREGEVIALTVPGSERSYDLTGLKPGTEYIVGILGVKGGRRSKPLRAQFTTGGGGSGGGGSGGGGSGGGGSLPAPKNLVASRVTEDSARLSWTAPDAAFDSFNIAYWEPGIGGEAIWLRVPGSERSYDLTGLKPGTEYKVWIHGVKGGASSPPLIARFTTGGHHHHHHC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:16)
Show buried residues

Minimal score value
-3.3216
Maximal score value
2.1725
Average score
-0.9289
Total score value
-294.4589

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4751
2 L A 0.1487
3 P A -0.3620
4 A A -0.4786
5 P A 0.0000
6 K A -2.0783
7 N A -1.4830
8 L A 0.0000
9 V A -0.0935
10 V A 0.0000
11 S A -1.1708
12 R A -2.3170
13 V A -1.6339
14 T A -2.1965
15 E A -2.8743
16 D A -2.8955
17 S A -2.3222
18 A A 0.0000
19 R A -2.1352
20 L A 0.0000
21 S A -0.9520
22 W A 0.0000
23 T A -1.3555
24 A A -1.3599
25 P A -1.3945
26 D A -2.2594
27 A A -1.4868
28 A A -1.2057
29 F A 0.0000
30 D A -2.6003
31 S A -1.4042
32 F A 0.0000
33 A A 0.0000
34 I A 0.0000
35 Y A 1.2764
36 Y A 0.8384
37 L A -0.0217
38 E A -0.7815
39 S A 0.0000
40 Y A 0.0681
41 P A -0.7128
42 E A -2.0677
43 G A -1.5883
44 E A -1.8028
45 A A -0.2460
46 I A 1.4258
47 V A 2.1725
48 L A 1.4191
49 T A 0.4551
50 V A 0.0000
51 P A -1.0756
52 G A 0.0000
53 S A -1.5539
54 E A -1.5677
55 R A -1.1077
56 S A -0.9719
57 Y A -1.1005
58 D A -2.2878
59 L A 0.0000
60 T A -1.5542
61 G A -1.5189
62 L A 0.0000
63 K A -2.9335
64 P A -2.6706
65 G A -1.9898
66 T A -1.3248
67 E A -0.4125
68 Y A 0.0000
69 W A 0.2064
70 V A 0.0000
71 G A 0.0000
72 I A 0.0000
73 D A 0.0000
74 G A 0.0000
75 V A -0.8866
76 K A -1.7572
77 G A -1.4585
78 G A -1.2130
79 T A -0.6299
80 W A -0.1502
81 S A 0.0000
82 S A -0.0429
83 P A -0.1211
84 L A -0.2661
85 S A -0.0756
86 A A 0.0000
87 I A 0.0000
88 F A 0.0000
89 T A -0.7971
90 T A 0.0000
91 G A -2.0561
92 G A -2.0042
93 G A -1.5951
94 G A -1.1439
95 S A -0.9438
96 G A -1.0077
97 G A -1.1638
98 G A -1.1392
99 G A -1.0961
100 S A -0.9932
101 G A -1.0873
102 G A -1.1818
103 G A -1.1693
104 G A -1.0900
105 S A -1.0260
106 G A -1.0773
107 G A -1.1291
108 G A -1.0602
109 G A -0.8611
110 S A -1.1433
111 L A -1.1715
112 P A -0.9907
113 A A -1.3314
114 P A 0.0000
115 K A -1.9481
116 N A -1.6136
117 L A -0.5964
118 V A 0.5496
119 V A -0.1674
120 S A -1.0060
121 R A -2.1418
122 V A -1.2935
123 T A -1.9870
124 E A -3.0535
125 D A -3.0277
126 S A -2.3788
127 A A 0.0000
128 R A -2.1873
129 L A 0.0000
130 S A -0.5888
131 W A 0.0000
132 T A -0.8412
133 A A -0.5395
134 P A 0.1909
135 Y A 0.8798
136 A A -0.0731
137 A A -0.1767
138 F A 0.0000
139 D A -2.3368
140 S A 0.0000
141 F A 0.0000
142 A A 0.0000
143 I A 0.0000
144 S A -0.0692
145 Y A 0.0000
146 R A -1.6426
147 E A -2.5749
148 R A -2.9845
149 S A -2.3170
150 R A -3.3216
151 E A -3.2969
152 G A -2.2659
153 E A -2.1926
154 V A -0.3203
155 I A 0.2759
156 A A 0.0000
157 L A 0.0000
158 T A -0.0714
159 V A 0.0000
160 P A -0.9345
161 G A 0.0000
162 S A -0.8090
163 E A -0.8942
164 R A -0.8676
165 S A -0.8861
166 Y A -1.2570
167 D A -2.4274
168 L A 0.0000
169 T A -1.6204
170 G A -1.5845
171 L A 0.0000
172 K A -3.1237
173 P A -2.8858
174 G A -2.1291
175 T A -2.0740
176 E A -2.0420
177 Y A 0.0000
178 I A -1.2420
179 V A 0.0000
180 G A -0.9565
181 I A 0.0000
182 L A 0.0000
183 G A 0.0000
184 V A 0.0000
185 K A -2.3500
186 G A -2.0119
187 G A -1.7251
188 R A -2.3772
189 R A -2.5211
190 S A 0.0000
191 K A -2.3457
192 P A -1.6851
193 L A -1.5016
194 R A -2.1921
195 A A -1.0780
196 Q A -1.6762
197 F A 0.0000
198 T A -1.4774
199 T A 0.0000
200 G A -1.9380
201 G A -2.0645
202 G A -1.9404
203 G A -1.3101
204 S A -0.9236
205 G A -1.0453
206 G A -1.0653
207 G A -1.0724
208 G A -1.0016
209 S A -0.9409
210 G A -1.0171
211 G A -1.1027
212 G A -1.1168
213 G A -1.0740
214 S A -0.9482
215 G A -1.0840
216 G A -1.2232
217 G A -1.0690
218 G A -0.9784
219 S A -0.5967
220 L A -0.3155
221 P A -0.5239
222 A A -0.6119
223 P A 0.0000
224 K A -1.9973
225 N A -1.4571
226 L A 0.0000
227 V A 0.5238
228 A A -0.4897
229 S A -0.9251
230 R A -2.0084
231 V A -1.1617
232 T A -1.8139
233 E A -2.9661
234 D A -2.6370
235 S A -2.0031
236 A A 0.0000
237 R A -1.5531
238 L A 0.0000
239 S A -0.5916
240 W A 0.0000
241 T A -1.3596
242 A A -1.4144
243 P A -1.3714
244 D A -2.2707
245 A A -1.4796
246 A A -1.1679
247 F A 0.0000
248 D A -2.4601
249 S A 0.0000
250 F A 0.0000
251 N A -0.3898
252 I A 0.0000
253 A A 0.0000
254 Y A 0.0000
255 W A 0.0000
256 E A -0.9135
257 P A -0.6082
258 G A 0.1379
259 I A 1.1969
260 G A 0.1282
261 G A -0.4967
262 E A -1.4014
263 A A -0.2760
264 I A 1.0046
265 W A 0.6669
266 L A 0.5140
267 R A -0.5147
268 V A 0.0000
269 P A -1.2099
270 G A 0.0000
271 S A -1.5479
272 E A -1.5964
273 R A -1.1584
274 S A -0.7087
275 Y A -0.9439
276 D A -2.0276
277 L A 0.0000
278 T A -1.3680
279 G A -1.4533
280 L A 0.0000
281 K A -2.9693
282 P A -2.7746
283 G A -2.1759
284 T A 0.0000
285 E A -1.7376
286 Y A 0.0000
287 K A -1.0698
288 V A 0.0000
289 W A 0.0000
290 I A 0.0000
291 H A 0.0000
292 G A 0.0000
293 V A -1.0362
294 K A -1.4705
295 G A -1.2699
296 G A -1.3091
297 A A -0.8014
298 S A -0.6885
299 S A 0.0000
300 P A -0.0731
301 P A -0.0154
302 L A 0.0774
303 I A 0.3155
304 A A -0.3573
305 R A -1.7578
306 F A 0.0000
307 T A -1.4973
308 T A 0.0000
309 G A -2.0463
310 G A -2.5075
311 H A -2.9139
312 H A -2.8557
313 H A -2.7973
314 H A -2.6645
315 H A -2.2373
316 H A -1.6018
317 C A -0.1733
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Laboratory of Theory of Biopolymers 2018