Project name: seed8

Status: done

Started: 2026-03-03 09:14:44
Settings
Chain sequence(s) A: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
B: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:13:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:13:29)
Show buried residues

Minimal score value
-4.014
Maximal score value
1.8084
Average score
-0.6804
Total score value
-440.9237

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.2388
2 A A -0.7642
3 S A -0.7015
4 C A -0.2977
5 E A -1.0259
6 Y A 0.5069
7 S A -0.0597
8 A A -0.1072
9 S A -0.4082
10 H A -0.8700
11 K A -1.0391
12 Q A -1.0752
13 D A -0.7629
14 L A 0.0000
15 L A 1.1269
16 L A 1.3097
17 G A 0.2709
18 S A 0.0699
19 T A -0.2145
20 G A 0.0091
21 S A -0.1210
22 I A 0.0000
23 S A -0.4352
24 C A 0.0000
25 P A 0.0000
26 S A -0.1437
27 L A 0.0000
28 S A -0.1865
29 C A 0.1455
30 Q A -0.7450
31 S A -1.0201
32 D A -1.5767
33 A A -1.3331
34 Q A -1.8091
35 S A 0.0000
36 P A -0.8066
37 A A -0.4039
38 V A 0.0000
39 T A 0.0000
40 W A 0.0000
41 Y A 0.0000
42 K A -0.5778
43 N A -0.6593
44 G A 0.0000
45 K A -0.4753
46 L A 0.1403
47 L A 0.2875
48 S A 0.2348
49 V A 0.2763
50 E A -0.2329
51 R A -1.0216
52 S A 0.0000
53 N A 0.0000
54 R A -0.7774
55 I A 0.1176
56 V A 0.2860
57 V A 0.0000
58 D A -0.4245
59 E A 0.0000
60 V A 0.0000
61 Y A -0.0105
62 D A -0.3311
63 Y A -0.6116
64 H A -0.7719
65 Q A -1.4898
66 G A -0.9399
67 T A 0.0000
68 Y A 0.0000
69 V A 0.0000
70 C A 0.0000
71 D A 0.0000
72 Y A 0.0000
73 T A -0.1782
74 Q A -0.8327
75 S A -0.9952
76 D A -1.4782
77 T A -0.1801
78 V A 1.0430
79 S A 0.0233
80 S A -0.3143
81 W A 0.0222
82 T A 0.0597
83 V A 0.1938
84 R A -0.0918
85 A A 0.0000
86 V A 0.0000
87 V A 0.0000
88 Q A -0.8312
89 V A 0.0000
90 R A -1.3659
91 T A 0.0025
92 I A 1.0839
93 V A 1.8084
94 G A -0.0572
95 D A -2.2750
96 T A -2.5137
97 K A -3.7683
98 D A -4.0140
99 K A -3.5502
100 T A -2.0754
101 H A -1.9278
102 T A -1.2432
103 C A -0.0934
104 P A -0.0308
105 P A 0.2881
106 C A 0.7329
107 P A -0.4833
108 A A -0.7117
109 P A -1.1247
110 E A -2.2098
111 A A -1.3873
112 A A -1.0054
113 G A -1.3060
114 G A -0.8871
115 P A 0.0000
116 S A -0.2471
117 V A 0.0000
118 F A -0.1091
119 L A 0.0000
120 F A 0.0000
121 P A -0.1469
122 P A 0.0000
123 K A 0.0000
124 P A 0.0000
125 K A -0.0953
126 D A 0.0000
127 T A 0.0000
128 L A 0.0000
129 M A 0.7374
130 I A 1.7414
131 S A 0.7103
132 R A 0.3503
133 T A 0.3908
134 P A 0.0000
135 E A -0.2303
136 V A 0.0000
137 T A 0.0000
138 C A 0.0000
139 V A 0.0000
140 V A 0.0000
141 V A 0.0000
142 D A -1.0765
143 V A 0.0000
144 S A -1.9242
145 H A -2.3625
146 E A -2.9062
147 D A -2.6038
148 P A -2.5753
149 E A -3.1089
150 V A -1.9598
151 K A -2.2384
152 F A -1.1316
153 N A -1.0766
154 W A 0.0000
155 Y A -0.5934
156 V A -0.7895
157 D A -1.8785
158 G A -0.7494
159 V A 0.6908
160 E A -0.5708
161 V A -0.5146
162 H A -1.8469
163 N A -2.1355
164 A A -1.7394
165 K A -2.2565
166 T A -1.8465
167 K A -2.0116
168 P A -2.0077
169 R A -2.7690
170 E A -2.4105
171 E A -2.7087
172 Q A 0.0000
173 Y A -0.8527
174 N A -1.3631
175 S A -1.1117
176 T A -1.4756
177 Y A -1.7995
178 R A 0.0000
179 V A 0.0000
180 V A 0.0000
181 S A 0.0000
182 V A 0.0000
183 L A 0.0000
184 T A -0.3437
185 V A 0.0000
186 L A 0.9234
187 H A 0.1358
188 Q A -1.1410
189 D A -1.4270
190 W A 0.0000
191 L A -1.0482
192 N A -2.1479
193 G A -2.2357
194 K A -2.2492
195 E A -2.3176
196 Y A 0.0000
197 K A -1.4761
198 C A 0.0000
199 K A -1.2493
200 V A 0.0000
201 S A -1.4449
202 N A 0.0000
203 K A -2.6538
204 A A -1.5660
205 L A -0.7683
206 G A -0.7780
207 A A -0.4128
208 P A -0.8079
209 I A -0.4201
210 E A -1.4393
211 K A -1.0620
212 T A -1.1064
213 I A 0.0000
214 S A 0.0000
215 K A -1.3539
216 A A -1.3398
217 K A -2.4959
218 G A -2.1244
219 Q A -2.2430
220 P A -1.9902
221 R A -2.4707
222 E A -2.8440
223 P A 0.0000
224 Q A -1.4112
225 V A 0.0000
226 Y A 0.0000
227 T A -0.8146
228 L A 0.0000
229 P A -0.3928
230 P A -0.8612
231 S A 0.0000
232 R A -2.6691
233 D A -2.7771
234 E A 0.0000
235 L A -1.7410
236 T A -1.4668
237 K A -1.9271
238 N A -2.3127
239 Q A -2.0906
240 V A 0.0000
241 S A 0.0000
242 L A 0.0000
243 T A 0.0000
244 C A 0.0000
245 L A 0.0000
246 V A 0.0000
247 K A -0.8136
248 G A -1.3667
249 F A 0.0000
250 Y A 0.0000
251 P A 0.0000
252 S A -0.4773
253 D A -0.6309
254 I A 0.0000
255 A A 0.0000
256 V A 0.0000
257 E A -0.6717
258 W A 0.0000
259 E A -1.5219
260 S A 0.0000
261 N A -1.8718
262 G A -1.7517
263 Q A -2.1401
264 P A -1.5977
265 E A 0.0000
266 N A -1.5603
267 N A -1.3472
268 Y A 0.0000
269 K A 0.0000
270 T A 0.0000
271 T A 0.0000
272 P A 0.0216
273 P A -0.1544
274 V A 0.0000
275 L A -0.2796
276 D A -0.9864
277 S A -1.4025
278 D A -2.0592
279 G A -1.1256
280 S A 0.0000
281 F A 0.0000
282 F A 0.0000
283 L A 0.0000
284 Y A 0.0000
285 S A 0.0000
286 K A 0.0000
287 L A 0.0000
288 T A -0.7521
289 V A 0.0000
290 D A -2.3866
291 K A -2.4343
292 S A -2.1676
293 R A -1.9543
294 W A 0.0000
295 Q A -2.3387
296 Q A -2.1231
297 G A -1.2623
298 N A -0.8937
299 V A -0.0050
300 F A 0.0000
301 S A 0.0000
302 C A 0.0000
303 S A 0.0000
304 V A 0.0000
305 M A 0.0000
306 H A 0.0000
307 E A -1.1825
308 A A -1.6996
309 L A 0.0000
310 H A -1.8383
311 N A -1.5189
312 H A -1.0099
313 Y A -0.5496
314 T A -0.8287
315 Q A -1.1717
316 K A -1.1890
317 S A -0.6165
318 L A 0.0000
319 S A -0.2189
320 L A -0.3592
321 S A -0.6334
322 P A -1.1077
323 G A -1.4149
324 K A -2.0331
1 N B -1.1962
2 A B -0.6475
3 S B -0.5311
4 C B 0.0269
5 E B -0.8595
6 Y B 0.6112
7 S B 0.0309
8 A B -0.1039
9 S B -0.5178
10 H B -0.9929
11 K B -1.1861
12 Q B -1.1429
13 D B -0.8611
14 L B 0.0000
15 L B 0.8089
16 L B 1.0844
17 G B -0.0457
18 S B -0.1503
19 T B -0.3632
20 G B -0.0447
21 S B -0.0705
22 I B 0.0000
23 S B -0.3871
24 C B 0.0000
25 P B 0.0000
26 S B 0.0706
27 L B 0.0000
28 S B -0.0451
29 C B 0.4122
30 Q B -0.6265
31 S B -0.8938
32 D B -1.4553
33 A B -1.3324
34 Q B -1.8449
35 S B 0.0000
36 P B -0.9098
37 A B -0.4828
38 V B 0.0000
39 T B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 K B -0.5644
43 N B -0.6337
44 G B 0.0000
45 K B -0.5492
46 L B 0.1182
47 L B 0.3057
48 S B 0.2949
49 V B 0.3857
50 E B -0.3565
51 R B -1.0771
52 S B 0.0000
53 N B 0.0000
54 R B -0.5886
55 I B 0.2162
56 V B 0.3708
57 V B 0.0000
58 D B -0.5983
59 E B 0.0000
60 V B 0.0000
61 Y B -0.0863
62 D B -0.4315
63 Y B -0.5710
64 H B -0.7415
65 Q B -1.4430
66 G B -0.8961
67 T B 0.0000
68 Y B 0.0000
69 V B 0.0000
70 C B 0.0000
71 D B 0.0000
72 Y B 0.0000
73 T B -0.1903
74 Q B -0.9501
75 S B -1.0529
76 D B -1.4957
77 T B -0.1796
78 V B 1.0463
79 S B 0.0240
80 S B -0.3252
81 W B 0.0108
82 T B 0.1250
83 V B 0.2918
84 R B 0.0000
85 A B 0.0000
86 V B 0.0000
87 V B 0.0000
88 Q B -0.8781
89 V B 0.0000
90 R B -1.3750
91 T B -0.0809
92 I B 0.9755
93 V B 1.6412
94 G B -0.1603
95 D B -2.3820
96 T B -2.5540
97 K B -3.6531
98 D B -3.9970
99 K B -3.5329
100 T B -2.0662
101 H B -1.7108
102 T B -1.0020
103 C B 0.1230
104 P B -0.0288
105 P B 0.1047
106 C B 0.5220
107 P B -0.4997
108 A B -0.7160
109 P B -1.2716
110 E B -2.1566
111 A B -1.3729
112 A B -1.0613
113 G B -1.3332
114 G B -0.8691
115 P B 0.0000
116 S B -0.2301
117 V B 0.0000
118 F B -0.1531
119 L B 0.0000
120 F B 0.0000
121 P B -0.1175
122 P B 0.0000
123 K B 0.0000
124 P B -0.3830
125 K B -0.1477
126 D B 0.0000
127 T B 0.0000
128 L B 0.0000
129 M B 0.7697
130 I B 1.8052
131 S B 0.8059
132 R B 0.0000
133 T B 0.5196
134 P B 0.0000
135 E B -0.0459
136 V B 0.0000
137 T B 0.0000
138 C B 0.0000
139 V B 0.0000
140 V B 0.0000
141 V B 0.0000
142 D B -1.0296
143 V B 0.0000
144 S B -1.8918
145 H B -2.3596
146 E B -2.8866
147 D B -2.5602
148 P B -2.5024
149 E B -3.0582
150 V B -1.9165
151 K B -2.2334
152 F B -1.1841
153 N B -1.1261
154 W B 0.0000
155 Y B -0.4940
156 V B -0.5846
157 D B -1.5920
158 G B -0.6170
159 V B 0.7673
160 E B -0.5516
161 V B -0.5112
162 H B -1.8721
163 N B -2.1776
164 A B -1.8144
165 K B -2.4402
166 T B -1.9065
167 K B -1.9936
168 P B -1.8685
169 R B -2.4328
170 E B -2.1776
171 E B -2.6159
172 Q B 0.0000
173 Y B -0.8950
174 N B -1.3280
175 S B -1.0884
176 T B -1.4436
177 Y B -1.7026
178 R B 0.0000
179 V B 0.0000
180 V B 0.0000
181 S B 0.0000
182 V B 0.0000
183 L B 0.0000
184 T B -0.3023
185 V B 0.0000
186 L B 1.0171
187 H B 0.2089
188 Q B -1.1002
189 D B -1.2623
190 W B 0.0000
191 L B -1.0125
192 N B -1.9534
193 G B -1.8401
194 K B -1.8677
195 E B -1.7595
196 Y B 0.0000
197 K B -1.4540
198 C B 0.0000
199 K B -1.3903
200 V B 0.0000
201 S B -1.4853
202 N B 0.0000
203 K B -2.6376
204 A B -1.5438
205 L B -0.7808
206 G B -0.9717
207 A B -0.4883
208 P B -0.8217
209 I B -0.4986
210 E B -1.7611
211 K B -1.2083
212 T B -1.0408
213 I B 0.0000
214 S B 0.0000
215 K B 0.0000
216 A B 0.0000
217 K B -1.7603
218 G B -1.7079
219 Q B -2.0024
220 P B -1.7082
221 R B -2.0719
222 E B -2.6264
223 P B 0.0000
224 Q B -1.2326
225 V B 0.0000
226 Y B 0.0000
227 T B -0.8534
228 L B 0.0000
229 P B -0.3773
230 P B -0.8421
231 S B 0.0000
232 R B -2.6367
233 D B -2.7898
234 E B 0.0000
235 L B -1.7231
236 T B -1.5251
237 K B -2.0825
238 N B -2.3610
239 Q B -2.1488
240 V B 0.0000
241 S B 0.0000
242 L B 0.0000
243 T B 0.0000
244 C B 0.0000
245 L B 0.0000
246 V B 0.0000
247 K B -0.7097
248 G B -1.1945
249 F B 0.0000
250 Y B -1.2530
251 P B 0.0000
252 S B -0.4326
253 D B -0.6977
254 I B 0.0000
255 A B 0.0000
256 V B 0.0000
257 E B -0.7174
258 W B 0.0000
259 E B -1.7341
260 S B 0.0000
261 N B -1.8930
262 G B -1.7773
263 Q B -2.2261
264 P B -1.7150
265 E B 0.0000
266 N B -2.0452
267 N B -1.4634
268 Y B 0.0000
269 K B 0.0000
270 T B 0.0000
271 T B 0.0000
272 P B 0.0209
273 P B -0.2056
274 V B 0.0000
275 L B -0.2499
276 D B -0.9554
277 S B -1.4817
278 D B -2.0287
279 G B -1.0663
280 S B 0.0000
281 F B 0.0000
282 F B 0.0000
283 L B 0.0000
284 Y B 0.0000
285 S B 0.0000
286 K B 0.0000
287 L B 0.0000
288 T B -0.7484
289 V B 0.0000
290 D B -2.2102
291 K B -2.3759
292 S B -2.1528
293 R B -2.0189
294 W B 0.0000
295 Q B -2.3045
296 Q B -2.1507
297 G B -1.2518
298 N B -0.9023
299 V B -0.0420
300 F B 0.0000
301 S B 0.0000
302 C B 0.0000
303 S B 0.0000
304 V B 0.0000
305 M B 0.0000
306 H B 0.0000
307 E B -1.2068
308 A B -1.6039
309 L B 0.0000
310 H B -1.8266
311 N B -1.5041
312 H B -1.0004
313 Y B -0.5752
314 T B -0.9824
315 Q B -1.5755
316 K B -1.3833
317 S B -0.7290
318 L B 0.0000
319 S B -0.1985
320 L B -0.2987
321 S B -0.5956
322 P B -1.0798
323 G B -1.4032
324 K B -2.0323
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Laboratory of Theory of Biopolymers 2018