Project name: abeta16

Status: done

Started: 2024-12-06 19:35:05
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQK
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-1.9229
Maximal score value
1.433
Average score
-0.7376
Total score value
-11.8014

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.8245
2 A A -0.6128
3 E A -1.5977
4 F A 0.2254
5 R A -1.8863
6 H A -1.0477
7 D A -1.8981
8 S A -0.6084
9 G A -0.1326
10 Y A 1.0976
11 E A -0.2574
12 V A 1.4330
13 H A -0.6856
14 H A -0.5436
15 Q A -1.5398
16 K A -1.9229
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Laboratory of Theory of Biopolymers 2018