Project name: aTfR_BF2_VHH_new_3

Status: done

Started: 2025-11-16 16:50:02
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Chain sequence(s) H: QVQLQESGGGEVQAGGSLRLSCAASGDISKYRFMGWYRQAPGKEREFVAGISRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALLIGAGDSDDLLYYWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:35)
Show buried residues

Minimal score value
-2.2098
Maximal score value
1.969
Average score
-0.349
Total score value
-42.572

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.1983
2 V H 0.0000
3 Q H -1.1434
4 L H 0.0000
5 Q H -1.1983
6 E H 0.0000
7 S H -0.1937
8 G H -0.3804
9 G H -0.2328
11 G H -0.4851
12 E H -1.7911
13 V H -0.2500
14 Q H -1.1534
15 A H -0.2691
16 G H -0.5023
17 G H -0.2365
18 S H -0.2381
19 L H 0.0308
20 R H -1.0008
21 L H 0.0000
22 S H -0.0033
23 C H 0.0000
24 A H 0.0290
25 A H 0.0000
26 S H -0.2370
27 G H -0.4631
28 D H -1.6450
29 I H 0.0000
30 S H -0.4345
35 K H -1.6962
36 Y H -0.2929
37 R H -1.3604
38 F H -0.0401
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 Y H 0.2681
43 R H 0.0000
44 Q H -0.4247
45 A H -0.0972
46 P H -0.3369
47 G H -0.7457
48 K H -1.7455
49 E H -2.2098
50 R H -1.2399
51 E H -0.3924
52 F H 0.7801
53 V H 0.0000
54 A H 0.0000
55 G H 0.0000
56 I H 0.0000
57 S H -0.3332
58 R H -1.9325
59 G H -0.8339
63 S H 0.0640
64 I H 1.9690
65 T H 0.4853
66 Y H 0.8480
67 Y H 0.4342
68 A H -0.2499
69 D H -1.9981
70 S H -0.5318
71 V H 0.0000
72 K H -1.9666
74 G H -0.8322
75 R H -0.4306
76 F H 0.0000
77 T H -0.0437
78 I H 0.0000
79 S H -0.1170
80 R H -0.3080
81 D H -0.7419
82 N H -1.3487
83 A H -0.4660
84 K H -1.7432
85 N H -0.6044
86 T H -0.0581
87 V H 0.0000
88 Y H 0.2740
89 L H 0.0000
90 Q H -0.4042
91 M H 0.0000
92 N H -0.4872
93 S H -0.2863
94 L H 0.0000
95 K H -1.5807
96 P H -0.6937
97 E H -1.8363
98 D H 0.0000
99 T H -0.0154
100 A H 0.0000
101 V H 0.4034
102 Y H 0.0000
103 Y H 0.1357
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 L H 0.0000
108 L H 1.2194
109 I H 0.5080
110 G H -0.3815
111 A H -0.0915
111A G H -0.7928
112B D H -1.9127
112A S H -0.8656
112 D H -2.1630
113 D H -1.8442
114 L H 1.2587
115 L H 0.7063
116 Y H 1.4051
117 Y H 0.6298
118 W H 0.5047
119 G H -0.2227
120 Q H -1.2149
121 G H 0.0000
122 T H -0.1397
123 Q H -0.6532
124 V H 0.0000
125 T H -0.2235
126 V H 0.0000
127 S H -0.3008
128 S H -0.2380
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Laboratory of Theory of Biopolymers 2018