Project name: GP41 Intein [mutate: NQ119A]

Status: done

Started: 2026-07-15 17:08:21
Settings
Chain sequence(s) A: SGGALDLKTQVQTPQGMKEISNIQVGDLVLSNTGYNEVLNVFPKSKKKSYKITLEDGKEIICSEEHLFPTQTGEMNISGGLKEGMCLYVKEMMLKKILKIEELDERELIDIEVSGNHLFYANDILTHN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues NQ119A
Energy difference between WT (input) and mutated protein (by FoldX) 1.48819 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:58)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:06)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:57)
Show buried residues

Minimal score value
-3.8259
Maximal score value
0.7742
Average score
-0.9747
Total score value
-124.7641

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
-2 S A -0.5499
-1 G A -0.6279
0 G A 0.0000
1 A A 0.0000
2 L A 0.0000
3 D A 0.0000
4 L A -1.5626
5 K A -2.3140
6 T A 0.0000
7 Q A -1.8538
8 V A 0.0000
9 Q A -0.7539
10 T A 0.0000
11 P A -0.7401
12 Q A -1.3785
13 G A -0.7677
14 M A -0.4800
15 K A -1.6193
16 E A -2.3225
17 I A 0.0000
18 S A -1.7272
19 N A -2.1668
20 I A 0.0000
21 Q A -0.8537
22 V A 0.7742
23 G A -0.2595
24 D A -0.8229
25 L A -0.3484
26 V A 0.0000
27 L A -0.0886
28 S A 0.0000
29 N A -0.9515
30 T A -0.4298
31 G A -0.2452
32 Y A 0.0413
33 N A 0.0000
34 E A -1.2054
35 V A 0.0000
36 L A 0.3315
37 N A -0.1956
38 V A 0.1225
39 F A 0.0040
40 P A -0.9864
41 K A -2.2721
42 S A -2.4655
43 K A -3.6433
44 K A -2.8856
45 K A -2.7284
46 S A 0.0000
47 Y A -1.9161
48 K A -1.7059
49 I A 0.0000
50 T A -2.0318
51 L A 0.0000
52 E A -2.4118
53 D A -2.1001
54 G A -1.7279
55 K A -2.0218
56 E A -1.9867
57 I A 0.0000
58 I A -0.6959
59 C A 0.0000
60 S A 0.0000
61 E A -1.0322
62 E A -0.9328
63 H A 0.0000
64 L A -0.5941
65 F A 0.0000
66 P A -1.0162
67 T A 0.0000
68 Q A -1.4185
69 T A -1.0832
70 G A -1.4194
71 E A -2.0644
72 M A -1.3164
73 N A -1.0376
74 I A -0.6395
75 S A -0.8391
76 G A -1.1063
77 G A -1.0533
78 L A 0.0000
79 K A -2.8211
80 E A -2.9900
81 G A -2.0159
82 M A -1.2766
83 C A -0.9374
84 L A 0.0000
85 Y A -0.3170
86 V A 0.0000
87 K A -2.0355
88 E A -2.0994
89 M A -0.3217
90 M A 0.4158
91 L A 0.1053
92 K A -0.7367
93 K A -2.0914
94 I A 0.0000
95 L A -1.6919
96 K A -2.9331
97 I A -2.4142
98 E A -2.9126
99 E A -3.1086
100 L A -2.1553
101 D A -3.3468
102 E A -3.8259
103 R A -3.1153
104 E A -3.1851
105 L A 0.0000
106 I A 0.0000
107 D A 0.0000
108 I A 0.0000
109 E A -0.5833
110 V A 0.0000
111 S A -0.8821
112 G A -1.0605
113 N A -0.9876
114 H A -1.2165
115 L A 0.0000
116 F A 0.0000
117 Y A 0.0000
118 A A 0.0000
119 Q A -1.5543 mutated: NQ119A
120 D A -1.9178
121 I A 0.0000
122 L A 0.0000
123 T A 0.0000
124 H A -0.6280
125 N A 0.0000
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Laboratory of Theory of Biopolymers 2018