| Chain sequence(s) |
H: QVQLVESGGGVVEPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYKPSEKDYADSAKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGGLLGYFDYWGQGTLVTVSS
L: EIVLTQSPGTLSLSPGERATLSCRASQSINSYLAWYQQKPGQAPRPLIYGVSSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGRYPFTFGPGTKVDIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:49)
[INFO] Main: Simulation completed successfully. (00:01:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4175 | |
| 2 | V | H | -0.7634 | |
| 3 | Q | H | -1.0992 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.0714 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.3986 | |
| 8 | G | H | -0.4821 | |
| 9 | G | H | 0.1682 | |
| 11 | G | H | 0.8304 | |
| 12 | V | H | 1.5155 | |
| 13 | V | H | 0.0000 | |
| 14 | E | H | -1.6617 | |
| 15 | P | H | -1.9716 | |
| 16 | G | H | -2.0045 | |
| 17 | R | H | -2.3031 | |
| 18 | S | H | -1.6592 | |
| 19 | L | H | -1.2049 | |
| 20 | R | H | -1.9173 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.3917 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.4249 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.9457 | |
| 27 | G | H | -0.9730 | |
| 28 | F | H | -0.3735 | |
| 29 | T | H | -0.1800 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.6779 | |
| 36 | S | H | -0.1378 | |
| 37 | Y | H | 0.5449 | |
| 38 | G | H | 0.1826 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6082 | |
| 45 | A | H | -1.0215 | |
| 46 | P | H | -0.8121 | |
| 47 | G | H | -1.4533 | |
| 48 | K | H | -2.2252 | |
| 49 | G | H | -1.3218 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8978 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | W | H | -0.5776 | |
| 58 | Y | H | -0.3098 | |
| 59 | K | H | -1.7006 | |
| 62 | P | H | -1.4000 | |
| 63 | S | H | -1.4212 | |
| 64 | E | H | -2.0268 | |
| 65 | K | H | -1.7757 | |
| 66 | D | H | -1.4384 | |
| 67 | Y | H | -1.2027 | |
| 68 | A | H | 0.0000 | |
| 69 | D | H | -2.6212 | |
| 70 | S | H | -1.6984 | |
| 71 | A | H | 0.0000 | |
| 72 | K | H | -2.4309 | |
| 74 | G | H | -1.6561 | |
| 75 | R | H | -1.5166 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.9949 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.3046 | |
| 80 | R | H | 0.0000 | |
| 81 | D | H | -1.3463 | |
| 82 | N | H | -1.6838 | |
| 83 | S | H | -1.5333 | |
| 84 | K | H | -2.3553 | |
| 85 | N | H | -1.7338 | |
| 86 | T | H | -0.9876 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.3166 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.2323 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.7087 | |
| 93 | S | H | -1.6663 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.6068 | |
| 96 | A | H | -1.7764 | |
| 97 | E | H | -2.2905 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.3895 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.7784 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | G | H | 0.0000 | |
| 108 | G | H | 0.9477 | |
| 109 | L | H | 1.8970 | |
| 110 | L | H | 1.5908 | |
| 113 | G | H | 0.0000 | |
| 114 | Y | H | 0.7300 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | 0.0803 | |
| 117 | Y | H | 0.2204 | |
| 118 | W | H | -0.1112 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4197 | |
| 121 | G | H | -0.2726 | |
| 122 | T | H | 0.4546 | |
| 123 | L | H | 1.7031 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.3580 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7290 | |
| 128 | S | H | -0.5082 | |
| 1 | E | L | -1.7728 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.7927 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.5765 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.8733 | |
| 8 | P | L | -0.6457 | |
| 9 | G | L | -0.9247 | |
| 10 | T | L | -0.7731 | |
| 11 | L | L | -0.2364 | |
| 12 | S | L | -0.1323 | |
| 13 | L | L | -0.4475 | |
| 14 | S | L | -0.9590 | |
| 15 | P | L | -1.3726 | |
| 16 | G | L | -1.9779 | |
| 17 | E | L | -2.7049 | |
| 18 | R | L | -3.1051 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6745 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.9075 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.2366 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.8024 | |
| 27 | Q | L | -1.3602 | |
| 28 | S | L | -1.3638 | |
| 29 | I | L | 0.0000 | |
| 36 | N | L | -1.6073 | |
| 37 | S | L | -0.7839 | |
| 38 | Y | L | 0.1181 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.3191 | |
| 46 | P | L | -0.9652 | |
| 47 | G | L | -1.4042 | |
| 48 | Q | L | -1.9632 | |
| 49 | A | L | -1.1738 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -0.7079 | |
| 52 | P | L | -0.3517 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.1583 | |
| 56 | G | L | -0.0826 | |
| 57 | V | L | 0.0000 | |
| 65 | S | L | -0.6361 | |
| 66 | S | L | -0.6235 | |
| 67 | R | L | -1.4071 | |
| 68 | A | L | -0.6851 | |
| 69 | T | L | -0.5352 | |
| 70 | G | L | -0.7872 | |
| 71 | I | L | -0.8976 | |
| 72 | P | L | -1.2392 | |
| 74 | D | L | -2.1733 | |
| 75 | R | L | -1.8424 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.9319 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.7080 | |
| 80 | G | L | -1.2876 | |
| 83 | S | L | -1.3005 | |
| 84 | G | L | -1.4986 | |
| 85 | T | L | -1.8041 | |
| 86 | D | L | -2.1664 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7724 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.7960 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -2.2022 | |
| 93 | R | L | -2.9601 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.8849 | |
| 96 | P | L | -1.0725 | |
| 97 | E | L | -1.6432 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.2313 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.4352 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | G | L | -0.4697 | |
| 109 | R | L | -1.0390 | |
| 114 | Y | L | -0.5883 | |
| 115 | P | L | -0.8887 | |
| 116 | F | L | 0.0000 | |
| 117 | T | L | -0.1767 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | P | L | -0.5602 | |
| 121 | G | L | -0.8398 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.3794 | |
| 124 | V | L | 0.0000 | |
| 125 | D | L | 0.1100 | |
| 126 | I | L | 1.0993 | |
| 127 | K | L | -0.7566 |