| Chain sequence(s) |
A: MADVQLVESGGRSVRAGDSLRLSCLASGGTFSLYAMGWFRQAPGKEREFVAAVTWSGGSTYYTDSVKGRFSISRDNAKNTVYLQMNSLKPEDTAVYYCAVRTSGFFGSIPVTERAFDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 0.5988 | |
| 2 | A | A | -0.4789 | |
| 3 | D | A | -1.6436 | |
| 4 | V | A | -1.0055 | |
| 5 | Q | A | -1.1195 | |
| 6 | L | A | 0.0000 | |
| 7 | V | A | 0.5060 | |
| 8 | E | A | -0.1702 | |
| 9 | S | A | -0.7255 | |
| 10 | G | A | -1.6373 | |
| 11 | G | A | -1.9977 | |
| 12 | R | A | -2.5927 | |
| 13 | S | A | -1.7151 | |
| 14 | V | A | -1.8078 | |
| 15 | R | A | -2.5081 | |
| 16 | A | A | -2.1612 | |
| 17 | G | A | -1.8550 | |
| 18 | D | A | -2.0402 | |
| 19 | S | A | -1.8103 | |
| 20 | L | A | 0.0000 | |
| 21 | R | A | -2.3978 | |
| 22 | L | A | 0.0000 | |
| 23 | S | A | -0.3234 | |
| 24 | C | A | 0.0000 | |
| 25 | L | A | 0.4976 | |
| 26 | A | A | 0.0000 | |
| 27 | S | A | -0.5587 | |
| 28 | G | A | -0.8004 | |
| 29 | G | A | -0.3893 | |
| 30 | T | A | 0.2846 | |
| 31 | F | A | 0.0000 | |
| 32 | S | A | 0.1252 | |
| 33 | L | A | 1.3583 | |
| 34 | Y | A | 1.1302 | |
| 35 | A | A | 0.0000 | |
| 36 | M | A | 0.0000 | |
| 37 | G | A | 0.0000 | |
| 38 | W | A | 0.0000 | |
| 39 | F | A | 0.0000 | |
| 40 | R | A | 0.0000 | |
| 41 | Q | A | -1.6029 | |
| 42 | A | A | -1.6898 | |
| 43 | P | A | -1.2208 | |
| 44 | G | A | -1.7235 | |
| 45 | K | A | -2.7872 | |
| 46 | E | A | -3.0117 | |
| 47 | R | A | -2.1771 | |
| 48 | E | A | -1.3691 | |
| 49 | F | A | -0.4700 | |
| 50 | V | A | 0.0000 | |
| 51 | A | A | 0.0000 | |
| 52 | A | A | 0.0000 | |
| 53 | V | A | 0.0000 | |
| 54 | T | A | 0.0000 | |
| 55 | W | A | 0.4053 | |
| 56 | S | A | -0.2998 | |
| 57 | G | A | -0.7995 | |
| 58 | G | A | -0.6691 | |
| 59 | S | A | -0.2497 | |
| 60 | T | A | 0.1073 | |
| 61 | Y | A | 0.3823 | |
| 62 | Y | A | -0.4049 | |
| 63 | T | A | -1.0865 | |
| 64 | D | A | -2.3427 | |
| 65 | S | A | -1.7456 | |
| 66 | V | A | 0.0000 | |
| 67 | K | A | -2.5414 | |
| 68 | G | A | -1.7949 | |
| 69 | R | A | -1.4996 | |
| 70 | F | A | 0.0000 | |
| 71 | S | A | -0.8640 | |
| 72 | I | A | 0.0000 | |
| 73 | S | A | -0.6399 | |
| 74 | R | A | -1.1969 | |
| 75 | D | A | -1.8279 | |
| 76 | N | A | -1.9674 | |
| 77 | A | A | -1.6301 | |
| 78 | K | A | -2.2499 | |
| 79 | N | A | -1.6481 | |
| 80 | T | A | 0.0000 | |
| 81 | V | A | 0.0000 | |
| 82 | Y | A | -0.5319 | |
| 83 | L | A | 0.0000 | |
| 84 | Q | A | -1.3058 | |
| 85 | M | A | 0.0000 | |
| 86 | N | A | -1.6391 | |
| 87 | S | A | -1.5283 | |
| 88 | L | A | 0.0000 | |
| 89 | K | A | -2.4126 | |
| 90 | P | A | -1.9886 | |
| 91 | E | A | -2.3169 | |
| 92 | D | A | 0.0000 | |
| 93 | T | A | -1.2912 | |
| 94 | A | A | 0.0000 | |
| 95 | V | A | -0.4133 | |
| 96 | Y | A | 0.0000 | |
| 97 | Y | A | -0.2229 | |
| 98 | C | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | V | A | 0.0000 | |
| 101 | R | A | 0.0000 | |
| 102 | T | A | 0.0970 | |
| 103 | S | A | 0.2955 | |
| 104 | G | A | 0.6990 | |
| 105 | F | A | 1.7691 | |
| 106 | F | A | 1.0952 | |
| 107 | G | A | 0.4203 | |
| 108 | S | A | 0.4277 | |
| 109 | I | A | 1.1583 | |
| 110 | P | A | 0.0088 | |
| 111 | V | A | 0.1858 | |
| 112 | T | A | -0.8647 | |
| 113 | E | A | -2.2534 | |
| 114 | R | A | -2.6453 | |
| 115 | A | A | -1.1123 | |
| 116 | F | A | 0.0000 | |
| 117 | D | A | -1.5822 | |
| 118 | Y | A | -0.2286 | |
| 119 | W | A | -0.1277 | |
| 120 | G | A | -0.2095 | |
| 121 | Q | A | -1.2105 | |
| 122 | G | A | -0.7079 | |
| 123 | T | A | 0.0000 | |
| 124 | Q | A | -1.8173 | |
| 125 | V | A | 0.0000 | |
| 126 | T | A | -1.5152 | |
| 127 | V | A | 0.0000 | |
| 128 | S | A | -1.3374 |