Project name: LC1_2

Status: done

Started: 2026-07-29 02:45:08
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Chain sequence(s) A: SEAKERASDLKAEAAARALAIIDAARAAVAAADPALAPLALAASGEAASAIALGMQEGLEVGVERVREVAERAPPAMAAALREAARLLEEAGRRVEELL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:21)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:22)
Show buried residues

Minimal score value
-4.8408
Maximal score value
1.0714
Average score
-1.3308
Total score value
-131.7499

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -2.2324
2 E A -3.4959
3 A A -2.7689
4 K A -3.6555
5 E A -4.7976
6 R A -4.2297
7 A A 0.0000
8 S A -3.2481
9 D A -3.8589
10 L A 0.0000
11 K A -2.4982
12 A A -2.0092
13 E A -2.7399
14 A A 0.0000
15 A A 0.0000
16 A A -1.0896
17 R A -1.9071
18 A A 0.0000
19 L A -0.1619
20 A A -0.4430
21 I A -0.2182
22 I A 0.0000
23 D A -1.0891
24 A A -0.4050
25 A A -0.2141
26 R A -0.2812
27 A A -0.2472
28 A A -0.3572
29 V A 0.0000
30 A A -0.0313
31 A A -0.2255
32 A A -0.3924
33 D A -0.8724
34 P A -0.4576
35 A A -0.0689
36 L A 0.4395
37 A A 0.4184
38 P A 0.7693
39 L A 1.0714
40 A A 0.0000
41 L A 1.0455
42 A A 0.3301
43 A A 0.0000
44 S A 0.0000
45 G A -1.0291
46 E A -2.2682
47 A A 0.0000
48 A A -0.7309
49 S A -1.0122
50 A A 0.0000
51 I A 0.0000
52 A A -0.4404
53 L A -0.8244
54 G A 0.0000
55 M A -0.9382
56 Q A -1.7820
57 E A -2.4093
58 G A -1.5978
59 L A 0.0000
60 E A -3.2697
61 V A -1.9898
62 G A 0.0000
63 V A 0.0000
64 E A -4.0305
65 R A -3.9714
66 V A 0.0000
67 R A -4.8408
68 E A -4.8019
69 V A -3.6112
70 A A 0.0000
71 E A -3.8273
72 R A -3.1221
73 A A -1.3540
74 P A 0.0000
75 P A -0.6913
76 A A -0.1211
77 M A 0.0000
78 A A -1.7372
79 A A -1.0338
80 A A 0.0000
81 L A 0.0000
82 R A -3.3385
83 E A -2.3129
84 A A 0.0000
85 A A 0.0000
86 R A -3.5189
87 L A -2.6122
88 L A 0.0000
89 E A -4.2720
90 E A -4.1427
91 A A 0.0000
92 G A -3.8087
93 R A -4.7748
94 R A -4.0066
95 V A 0.0000
96 E A -3.2817
97 E A -2.9047
98 L A -1.3979
99 L A -0.0219
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Laboratory of Theory of Biopolymers 2018