Project name: 8eb173dc6544e74 [mutate: VA2A]

Status: done

Started: 2025-03-01 12:11:50
Settings
Chain sequence(s) A: NVDPNANPNVD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VA2A
Energy difference between WT (input) and mutated protein (by FoldX) -0.0357807 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:04)
Show buried residues

Minimal score value
-2.7457
Maximal score value
-0.271
Average score
-1.7631
Total score value
-19.3939

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.7178
2 A A -1.6732 mutated: VA2A
3 D A -2.7457
4 P A -2.2422
5 N A -2.4229
6 A A -1.5806
7 N A -1.8712
8 P A -1.7777
9 N A -1.4988
10 V A -0.2710
11 D A -1.5928
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Laboratory of Theory of Biopolymers 2018