Chain sequence(s) |
A: NVDPNANPNVD
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | VA2A |
Energy difference between WT (input) and mutated protein (by FoldX) | -0.0357807 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:01) [INFO] FoldX: Starting FoldX energy minimalization (00:00:02) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:03) [INFO] Main: Simulation completed successfully. (00:00:04) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | N | A | -1.7178 | |
2 | A | A | -1.6732 | mutated: VA2A |
3 | D | A | -2.7457 | |
4 | P | A | -2.2422 | |
5 | N | A | -2.4229 | |
6 | A | A | -1.5806 | |
7 | N | A | -1.8712 | |
8 | P | A | -1.7777 | |
9 | N | A | -1.4988 | |
10 | V | A | -0.2710 | |
11 | D | A | -1.5928 |