Project name: GabysProposal

Status: done

Started: 2026-06-25 00:18:08
Settings
Chain sequence(s) A: ACTGSTQHQCGGGGGSGPAGPSGPAGKDGREAAAKKDIEAAAKKTTKS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:50)
Show buried residues

Minimal score value
-4.0634
Maximal score value
0.3329
Average score
-1.8459
Total score value
-88.6017

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.3329
2 C A 0.3141
3 T A -0.1219
4 G A -0.7391
5 S A -0.7961
6 T A -1.2933
7 Q A -1.9658
8 H A -2.1483
9 Q A -1.9348
10 C A -0.7721
11 G A -1.3741
12 G A -1.2238
13 G A -1.2471
14 G A -1.2507
15 G A -1.1648
16 S A -0.9124
17 G A -0.9455
18 P A -0.7159
19 A A -0.5347
20 G A -0.8124
21 P A -0.7515
22 S A -0.7206
23 G A -0.8621
24 P A -0.8482
25 A A -1.5477
26 G A -2.5501
27 K A -3.7759
28 D A -3.8704
29 G A -3.1411
30 R A -3.9798
31 E A -4.0634
32 A A -3.1779
33 A A -2.5465
34 A A -2.7532
35 K A -3.3912
36 K A -3.4924
37 D A -2.8119
38 I A -1.0203
39 E A -3.0765
40 A A -2.4846
41 A A -1.8013
42 A A -2.0510
43 K A -3.0768
44 K A -3.2916
45 T A -1.9718
46 T A -1.9997
47 K A -2.7221
48 S A -1.5163
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Laboratory of Theory of Biopolymers 2018