Project name: dae53a3ef211772

Status: done

Started: 2024-12-20 12:03:03
Settings
Chain sequence(s) L: DFVLTQSPHSLSVTPGESASISCKSSHSLIHGDRNNYLAWYVQKPGRSPQLLIYLASSRASGVPDRFSGSGSDKDFTLKISRVETEDVGTYYCMQGRESPWTFGQGTKVDIKDKTHTASELTQDPAVSVALKQTVTITCRGDSLRSHYASWYQKKPGQAPVLLFYGKNNRPSGIPDRFSGSASGNRASLTITGAQAEDEADYYCSSRDKSGSRLSVFGGGTKLTVLDKTHTRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
input PDB
Selected Chain(s) L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with L chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:47)
Show buried residues

Minimal score value
-3.9202
Maximal score value
1.9565
Average score
-1.0232
Total score value
-343.7817

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D L -0.7697
2 F L 1.1422
3 V L 1.9565
4 L L 0.7214
5 T L -0.3922
6 Q L 0.0000
7 S L -0.9803
8 P L -0.9792
9 H L -1.6862
10 S L -1.4010
11 L L -0.9284
12 S L -1.1410
13 V L -0.9940
14 T L -2.1118
15 P L -2.3662
16 G L -2.4841
17 E L -2.9069
18 S L -2.2880
19 A L -1.2527
20 S L -0.8205
21 I L 0.0000
22 S L -0.9375
23 C L 0.0000
24 K L -1.6725
25 S L -0.6778
26 S L -0.3295
27 H L -1.2330
28 S L -1.7839
29 L L 0.0000
30 I L -1.5933
31 H L -2.1764
32 G L -2.3249
34 D L -3.1595
35 R L -3.3879
36 N L -2.1965
37 N L -1.1930
38 Y L -0.0231
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.3413
43 V L 0.0000
44 Q L -1.4661
45 K L -1.8949
46 P L -1.7014
47 G L -1.7391
48 R L -2.6317
49 S L -1.6951
50 P L -1.2801
51 Q L -0.9675
52 L L 0.3015
53 L L 0.0000
54 I L 0.0000
55 Y L 0.9459
56 L L 0.8090
57 A L 0.0314
65 S L -0.2237
66 S L -0.2153
67 R L -0.9474
68 A L -0.4352
69 S L -0.5021
70 G L -0.7851
71 V L -0.8639
72 P L -1.3836
74 D L -2.3155
75 R L -2.2030
76 F L 0.0000
77 S L -1.4509
78 G L 0.0000
79 S L -0.8140
80 G L -1.2681
83 S L -1.7683
84 D L -2.6811
85 K L -2.3810
86 D L -2.1864
87 F L 0.0000
88 T L -0.9311
89 L L 0.0000
90 K L -1.9914
91 I L 0.0000
92 S L -2.6989
93 R L -3.4580
94 V L 0.0000
95 E L -3.0658
96 T L -1.8734
97 E L -2.3334
98 D L 0.0000
99 V L -1.1902
100 G L 0.0000
101 T L -1.2680
102 Y L 0.0000
103 Y L 0.0933
104 C L 0.0000
105 M L 1.1964
106 Q L 0.0000
107 G L -0.0566
108 R L -1.2099
109 E L -1.0756
114 S L -0.6903
115 P L -0.0546
116 W L 0.9242
117 T L 1.2680
118 F L 1.6720
119 G L 0.3029
120 Q L -1.0567
121 G L 0.0000
122 T L 0.0000
123 K L -2.3486
124 V L -1.3641
125 D L -2.0971
126 I L -1.8061
127 K L -2.4004
128 D L -3.3423
129 K L -3.0507
130 T L -2.1052
131 H L -1.7641
132 T L -1.7014
133 A L -0.9797
134 S L -0.8414
135 E L -2.2367
136 L L 0.0000
137 T L -1.8462
138 Q L 0.0000
139 D L -2.3945
140 P L -1.7215
141 A L -0.9956
142 V L -0.5218
143 S L -0.0583
144 V L -0.0576
145 A L -0.7548
146 L L -1.5071
147 K L -2.2864
148 Q L -1.6436
149 T L -0.8487
150 V L -0.0301
151 T L 0.0288
152 I L 0.0000
153 T L -1.1804
154 C L 0.0000
155 R L -3.6032
156 G L 0.0000
157 D L -3.9202
158 S L 0.0000
159 L L 0.0000
160 R L -3.2603
161 S L -1.6769
162 H L -0.9117
163 Y L 0.1337
164 A L 0.0000
165 S L 0.4537
166 W L 0.0000
167 Y L 0.7143
168 Q L 0.0000
169 K L -1.2913
170 K L -1.8840
171 P L -1.2717
172 G L -1.3863
173 Q L -1.6779
174 A L -0.7265
175 P L -0.3604
176 V L 0.7096
177 L L 0.9407
178 L L 0.0000
179 F L 0.0000
180 Y L -0.5001
181 G L -1.1833
182 K L -2.4719
183 N L -2.9044
184 N L -2.7012
185 R L -2.2261
186 P L -0.9761
187 S L -0.9653
188 G L -0.8232
189 I L -0.5304
190 P L -1.2186
191 D L -2.1917
192 R L -1.2964
193 F L 0.0000
194 S L -1.0845
195 G L 0.0000
196 S L -0.9032
197 A L -1.2838
198 S L -1.3026
199 G L -2.3631
200 N L -3.1821
201 R L -3.3706
202 A L 0.0000
203 S L -0.8214
204 L L 0.0000
205 T L -0.1438
206 I L 0.0000
207 T L -1.0430
208 G L -1.4066
209 A L 0.0000
210 Q L -1.8955
211 A L -1.7233
212 E L -2.4274
213 D L 0.0000
214 E L -2.4288
215 A L -1.9007
216 D L -1.5193
217 Y L 0.0000
218 Y L 0.1264
219 C L 0.0000
220 S L 0.0000
221 S L -0.0818
222 R L -1.7342
223 D L -2.1717
224 K L -3.1554
225 S L -2.3917
226 G L -1.4594
227 S L -1.5519
228 R L -1.7327
229 L L -0.1130
230 S L -0.3407
231 V L 0.1465
232 F L 0.8809
233 G L -0.3595
234 G L -0.9301
235 G L 0.0000
236 T L 0.0000
237 K L -2.4449
238 L L 0.0000
239 T L -0.6888
240 V L -1.0038
241 L L -0.4456
242 D L -2.2761
243 K L -2.4863
244 T L -2.2098
245 H L -2.2710
246 T L -1.6172
247 R L -1.6913
248 T L -0.2493
249 V L 0.7292
250 A L 0.0713
251 A L -0.1016
252 P L 0.0023
253 S L 0.0303
254 V L 0.0000
255 F L 1.8796
256 I L 1.7052
257 F L 1.9536
258 P L 0.0373
259 P L 0.0000
260 S L -1.7316
261 D L -3.2486
262 E L -3.4312
263 Q L -2.6414
264 L L -2.6963
265 K L -3.0474
266 S L -2.0076
267 G L -1.2853
268 T L -0.9735
269 A L 0.0000
270 S L -0.0510
271 V L 0.0000
272 V L 0.8139
273 C L 0.0000
274 L L 0.7443
275 L L 0.0000
276 N L -0.6514
277 N L -1.4490
278 F L 0.0000
279 Y L 0.0000
280 P L -1.6449
281 R L -2.4903
282 E L -3.3099
283 A L -2.4514
284 K L -2.3073
285 V L -1.2906
286 Q L -0.6317
287 W L 0.0000
288 K L -0.6557
289 V L -1.1211
290 D L -2.0504
291 N L -1.5295
292 A L -0.4431
293 L L 0.6419
294 Q L -0.5187
295 S L -0.5829
296 G L -1.3281
297 N L -1.9028
298 S L -1.8893
299 Q L -2.4828
300 E L -2.1076
301 S L -0.6781
302 V L 0.3186
303 T L -0.6710
304 E L -2.1874
305 Q L -2.5927
306 D L -3.4617
307 S L -2.6934
308 K L -2.9901
309 D L -2.7184
310 S L -2.6725
311 T L 0.0000
312 Y L -1.5023
313 S L -0.8101
314 L L 0.0000
315 S L -0.3960
316 S L 0.0000
317 T L -0.8156
318 L L 0.0000
319 T L -0.7356
320 L L -0.8196
321 S L -1.1283
322 K L -2.0397
323 A L -1.5705
324 D L -2.2441
325 Y L 0.0000
326 E L -3.5949
327 K L -3.5459
328 H L -3.0585
329 K L -3.1594
330 V L -1.7379
331 Y L 0.0000
332 A L -0.5514
333 C L 0.0000
334 E L -0.9284
335 V L 0.0000
336 T L -1.3060
337 H L -1.6242
338 Q L -1.8278
339 G L -0.4689
340 L L -0.3023
341 S L -0.5867
342 S L -0.4449
343 P L -0.4813
344 V L 0.1634
345 T L -0.1616
346 K L -0.1278
347 S L -0.5359
348 F L 0.0000
349 N L -2.4495
350 R L -2.5982
351 G L -1.4458
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Laboratory of Theory of Biopolymers 2018