Project name: 6YIO

Status: done

Started: 2026-03-23 03:19:02
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSLAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSSLRSEDTAVYYCARGGSVSGTLVDFDIWGQGTMVTVSSASTKGPSVFPLAPGTAALGCCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSSLGTQTYICCNVNHKPSNTKVDKKVEPK
B: ELCDDDPPEIPHATFKAMAYKEGTMMLNCECKRGFRRIKSGSLYMLCTGNSSHSSWDNQCQCMQPVDQASLPGHCREPPPWENEATERIYHFVVGQMMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQPQLICT
L: DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQQPDDFATYYCQQYNIYPITFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
input PDB
Selected Chain(s) H,B,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:20)
Show buried residues

Minimal score value
-3.8851
Maximal score value
1.8674
Average score
-0.7365
Total score value
-414.6656

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E B -1.8002
2 L B -0.7865
3 C B 0.0000
4 D B -3.6876
5 D B -3.8851
6 D B -3.5499
7 P B 0.0000
8 P B -2.1215
9 E B -2.3347
10 I B 0.0000
11 P B -0.5876
12 H B -0.6988
13 A B -0.2443
14 T B -0.2834
15 F B -0.0477
16 K B -0.2960
17 A B 0.0000
18 M B -0.4404
19 A B -1.4040
20 Y B 0.0000
21 K B -1.6767
22 E B -2.5469
23 G B -1.1819
24 T B 0.0000
25 M B 0.3727
26 L B 0.0000
27 N B 0.3765
28 C B 0.0000
29 E B -1.5715
30 C B -2.4626
31 K B -2.8106
32 R B -2.6741
33 G B -1.6511
34 F B -1.6342
35 R B -2.8556
36 R B -2.3210
37 I B -1.4668
38 K B -2.2664
39 S B -1.0514
40 G B -1.2982
41 S B -0.8129
42 L B 0.5111
43 Y B 0.5064
44 M B 0.0000
45 L B -0.3604
46 C B 0.0000
47 T B -1.4050
48 G B -1.7650
49 N B -1.8726
50 S B -1.0030
51 S B -0.7495
52 H B -0.9025
53 S B 0.0000
54 S B -1.4026
55 W B -1.7068
56 D B -1.6190
57 N B -2.0578
58 Q B -2.0430
59 C B 0.0000
60 Q B -2.5416
61 C B -2.0139
92 M B 0.0771
93 Q B -0.7046
94 P B -0.2806
95 V B 0.2193
96 D B -1.7213
97 Q B -1.7202
98 A B -0.9764
99 S B -0.5859
100 L B 0.4824
101 P B -0.7233
102 G B -1.3060
103 H B -1.6236
104 C B 0.0000
105 R B -2.7525
106 E B -2.7097
107 P B 0.0000
108 P B -1.6246
109 P B -0.9890
110 W B -1.3042
111 E B -2.1111
112 N B -2.3301
113 E B -2.3606
114 A B -1.8446
115 T B -1.5826
116 E B -2.1213
117 R B -1.1940
118 I B -0.3023
119 Y B -0.1887
120 H B -0.7005
121 F B 0.0000
122 V B 0.0000
123 V B -0.4438
124 G B -0.3293
125 Q B 0.0000
126 M B 0.0737
127 V B 0.0000
128 Y B 0.0000
129 Y B 0.0000
130 Q B 0.0000
131 C B 0.0000
132 V B -0.1559
133 Q B -1.0870
134 G B -0.8025
135 Y B -0.0389
136 R B 0.3280
137 A B 0.9266
138 L B 1.3799
139 H B 0.3825
140 R B -0.4696
141 G B -0.3349
142 P B -0.5614
143 A B 0.0000
144 E B -0.7750
145 S B 0.0000
146 V B -0.4802
147 C B 0.0000
148 K B -1.8008
149 M B -1.1002
150 T B -1.4844
151 H B -1.8837
152 G B -1.8456
153 K B -2.8056
154 T B 0.0000
155 R B -3.5360
156 W B 0.0000
157 T B -1.4405
158 Q B -2.0305
159 P B 0.0000
160 Q B -1.1094
161 L B 0.0000
162 I B 1.8674
163 C B 0.0000
164 T B 0.5646
1 Q H -1.4962
2 V H -1.0689
3 Q H -1.5265
4 L H 0.0000
5 V H -0.0851
6 Q H 0.0000
7 S H -0.5706
8 G H -0.5582
9 A H -0.0051
10 E H -0.1825
11 V H 0.4064
12 K H -1.1554
13 K H -2.2624
14 P H -2.2441
15 G H -1.5798
16 S H -1.2618
17 S H -1.3476
18 V H 0.0000
19 K H -1.9399
20 V H 0.0000
21 S H -0.5115
22 C H 0.0000
23 K H -0.9934
24 A H 0.0000
25 S H -0.9643
26 G H -1.2988
27 G H -1.1529
28 T H -0.6837
29 F H 0.0000
30 S H 0.0000
31 S H 0.0000
32 L H 0.0000
33 A H 0.0000
34 I H 0.0000
35 S H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H -0.4034
39 Q H -0.6616
40 A H -0.9972
41 P H -0.8112
42 G H -1.2474
43 Q H -1.7574
44 G H -1.1305
45 L H 0.0000
46 E H -0.6725
47 W H 0.0000
48 M H 0.0000
49 G H 0.0000
50 G H 0.0000
51 I H 0.0000
52 I H 0.0000
53 P H 0.0000
54 I H 0.0000
55 F H 0.1157
56 G H -0.4317
57 T H -0.2358
58 A H -0.1247
59 N H -0.1039
60 Y H -0.3197
61 A H 0.0000
62 Q H -2.3468
63 K H -2.7122
64 F H 0.0000
65 Q H -2.4043
66 G H -1.6618
67 R H -1.4378
68 V H 0.0000
69 T H -0.5292
70 I H 0.0000
71 T H -0.3107
72 A H -0.6171
73 D H -1.2217
74 E H -0.9294
75 S H -0.6547
76 T H -0.7172
77 S H 0.0000
78 T H 0.0000
79 A H 0.0000
80 Y H -0.4434
81 M H 0.0000
82 E H -1.2913
83 L H 0.0000
84 S H -1.0984
85 S H -1.1686
86 L H 0.0000
87 R H -3.0241
88 S H -2.3324
89 E H -2.4980
90 D H 0.0000
91 T H -0.8683
92 A H 0.0000
93 V H 0.2214
94 Y H 0.0000
95 Y H 0.0000
96 C H 0.0000
97 A H 0.0000
98 R H 0.0000
99 G H 0.0000
100 G H 0.0000
101 S H 0.0000
102 V H 0.0000
103 S H -0.0299
104 G H -0.2032
105 T H 0.0000
106 L H 0.1986
107 V H 0.0000
108 D H 0.0000
109 F H 0.0000
110 D H -0.5573
111 I H -0.4850
112 W H -0.6031
113 G H 0.0000
114 Q H -1.5139
115 G H -0.7476
116 T H 0.0000
117 M H 0.2299
118 V H 0.0000
119 T H 0.0000
120 V H 0.0000
121 S H -1.2785
122 S H -1.0851
123 A H -0.5632
124 S H -0.6171
125 T H -0.5477
126 K H -1.1768
127 G H -1.3110
128 P H 0.0000
129 S H -0.4288
130 V H 0.0000
131 F H 0.0000
132 P H -1.3884
133 L H 0.0000
134 A H -1.2621
135 P H -0.7893
143 G H -0.6376
144 T H -0.4851
145 A H -0.2208
146 A H 0.0000
147 L H 0.0000
148 G H 0.0000
149 C H 0.0000
150 L H 0.0000
151 V H 0.0000
152 K H 0.0000
153 D H -0.3952
154 Y H 0.0000
155 F H 0.0000
156 P H 0.0000
157 E H -0.7763
158 P H -1.0045
159 V H -0.7572
160 T H -0.5611
161 V H -0.1098
162 S H -0.3698
163 W H 0.0000
164 N H -0.8266
165 S H -0.6915
166 G H -0.5695
167 A H -0.2965
168 L H -0.0721
169 T H -0.1980
170 S H -0.3734
171 G H -0.4299
172 V H 0.1352
173 H H 0.0000
174 T H 0.0712
175 F H 0.0000
176 P H -0.3918
177 A H 0.0418
178 V H 0.3896
179 L H 1.1105
180 Q H 0.2685
181 S H -0.0484
182 S H -0.1839
183 G H 0.0364
184 L H 0.0444
185 Y H 0.0000
186 S H 0.0000
187 L H 0.0000
188 S H 0.0000
189 S H 0.0000
190 V H 0.0000
191 V H 0.0000
192 T H -0.1335
193 V H 0.0000
194 P H -0.4573
195 S H -0.5044
196 S H -0.6097
197 S H 0.0000
198 L H -0.8184
199 G H -0.9736
200 T H -0.8059
201 Q H -1.3823
202 T H -1.3099
203 Y H 0.0000
204 I H -1.2392
205 C H 0.0000
206 N H -1.3831
207 V H 0.0000
208 N H -1.7653
209 H H 0.0000
210 K H -2.7548
211 P H -1.6961
212 S H -1.7959
213 N H -2.5649
214 T H -2.0318
215 K H -2.5999
216 V H -1.4528
217 D H -2.2235
218 K H -2.0548
219 K H -2.4354
220 V H 0.0000
221 E H -2.9879
222 P H -2.1742
223 K H -2.5623
1 D L -2.0027
2 I L 0.0000
3 Q L -2.0654
4 M L 0.0000
5 T L -1.0218
6 Q L 0.0000
7 S L -0.6401
8 P L -0.5484
9 S L -0.7470
10 T L -0.6746
11 L L -0.4160
12 S L -0.7403
13 A L 0.0000
14 S L -0.4487
15 V L 0.3869
16 G L -0.7111
17 D L -1.5922
18 R L -2.2853
19 V L 0.0000
20 T L -0.5105
21 I L 0.0000
22 T L -0.7078
23 C L 0.0000
24 R L -1.9742
25 A L 0.0000
26 S L -1.7885
27 Q L -2.1053
28 S L -1.3012
29 I L 0.0000
30 S L -0.8779
31 S L -0.8984
32 W L -0.3444
33 L L 0.0000
34 A L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -1.7227
40 P L -1.5299
41 G L -1.6512
42 K L -2.6018
43 A L -1.6362
44 P L 0.0000
45 K L -1.5839
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L -0.4863
50 K L -1.1103
51 A L 0.0000
52 S L -0.6652
53 S L -0.3690
54 L L 0.0448
55 E L -0.4085
56 S L -0.4206
57 G L -0.5063
58 V L -0.3682
59 P L -0.3544
60 S L -0.4568
61 R L -0.8950
62 F L 0.0000
63 S L -0.3695
64 G L -0.4550
65 S L -0.9149
66 G L -1.2891
67 S L -1.2144
68 G L -1.1907
69 T L -1.6929
70 E L -2.3744
71 F L 0.0000
72 T L -0.7317
73 L L 0.0000
74 T L -0.6615
75 I L 0.0000
76 S L -1.3594
77 S L -1.2013
78 L L 0.0000
79 Q L -0.9230
80 P L -0.8536
81 D L -1.8755
82 D L 0.0000
83 F L -0.4273
84 A L 0.0000
85 T L -0.8120
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 Y L 0.0000
92 N L 0.3547
93 I L 0.9182
94 Y L 0.5945
95 P L -0.2239
96 I L 0.0000
97 T L -0.4376
98 F L -0.2708
99 G L 0.0000
100 G L -1.0893
101 G L -0.8859
102 T L 0.0000
103 K L -1.3996
104 V L 0.0000
105 E L 0.0000
106 I L -0.2743
107 K L -1.2951
108 R L -1.0386
109 T L -0.0535
110 V L 0.5664
111 A L 0.2746
112 A L -0.0563
113 P L 0.0000
114 S L -0.1400
115 V L 0.0000
116 F L 0.1447
117 I L 0.1595
118 F L 0.0000
119 P L -0.4851
120 P L 0.0000
121 S L -1.9450
122 D L -3.2708
123 E L -3.2447
124 Q L 0.0000
125 L L -2.3909
126 K L -2.9460
127 S L -1.7929
128 G L -1.2605
129 T L -0.8878
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -0.8794
139 F L 0.0000
140 Y L 0.0000
141 P L -1.7099
142 R L -3.1483
143 E L -3.2790
144 A L -2.3467
145 K L -2.3521
146 V L -1.1280
147 Q L -0.6607
148 W L 0.0000
149 K L -0.5478
150 V L 0.0000
151 D L -1.8349
152 N L -1.4584
153 A L -0.2063
154 L L 0.7461
155 Q L -0.2774
156 S L -0.6571
157 G L -1.3079
158 N L -1.6530
159 S L -1.6034
160 Q L -1.6933
161 E L -2.0493
162 S L -1.1058
163 V L -0.9089
164 T L -1.1944
165 E L -2.2793
166 Q L -1.8510
167 D L -1.9165
168 S L -1.7216
169 K L -2.3054
170 D L -1.7061
171 S L -1.6679
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.8430
179 L L 0.0000
180 T L -0.5739
181 L L -0.9226
182 S L -1.1822
183 K L -2.2161
184 A L -2.0791
185 D L -2.8954
186 Y L 0.0000
187 E L -3.7918
188 K L -3.8282
189 H L -3.0557
190 K L -3.1292
191 V L -1.2539
192 Y L 0.0000
193 A L 0.0000
194 C L 0.0000
195 E L -0.9562
196 V L 0.0000
197 T L -1.2577
198 H L 0.0000
199 Q L -1.5637
200 G L -0.3688
201 L L -0.2217
202 S L -0.4690
203 S L -0.4422
204 P L -0.5868
205 V L 0.0003
206 T L -0.4994
207 K L -0.7052
208 S L -0.5021
209 F L -0.8183
210 N L -1.7298
211 R L -2.4672
212 G L -2.1025
213 E L -2.4575
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Laboratory of Theory of Biopolymers 2018