| Chain sequence(s) |
A: IVIVKGH
C: IVIVKGH B: IVIVKGH E: IVIVKGH D: IVIVKGH G: IVIVKGH F: IVIVKGH H: IVIVKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:58)
[INFO] Main: Simulation completed successfully. (00:02:00)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | I | A | 2.3430 | |
| 2 | V | A | 3.0130 | |
| 3 | I | A | 0.0000 | |
| 4 | V | A | 1.5382 | |
| 5 | K | A | -1.0283 | |
| 6 | G | A | -1.5458 | |
| 7 | H | A | -2.2995 | |
| 1 | I | B | 2.5707 | |
| 2 | V | B | 3.2656 | |
| 3 | I | B | 0.0000 | |
| 4 | V | B | 1.3000 | |
| 5 | K | B | -1.3405 | |
| 6 | G | B | -1.8629 | |
| 7 | H | B | -2.4148 | |
| 1 | I | C | 3.4049 | |
| 2 | V | C | 3.8257 | |
| 3 | I | C | 2.8014 | |
| 4 | V | C | 1.5622 | |
| 5 | K | C | -1.5488 | |
| 6 | G | C | -1.8192 | |
| 7 | H | C | -2.0893 | |
| 1 | I | D | 3.2781 | |
| 2 | V | D | 3.6876 | |
| 3 | I | D | 2.6764 | |
| 4 | V | D | 1.4705 | |
| 5 | K | D | -1.5790 | |
| 6 | G | D | -1.8092 | |
| 7 | H | D | -2.0829 | |
| 1 | I | E | 2.5428 | |
| 2 | V | E | 3.2057 | |
| 3 | I | E | 0.0000 | |
| 4 | V | E | 1.3057 | |
| 5 | K | E | -1.3148 | |
| 6 | G | E | -1.7782 | |
| 7 | H | E | -2.4074 | |
| 1 | I | F | 2.6327 | |
| 2 | V | F | 3.2191 | |
| 3 | I | F | 0.0000 | |
| 4 | V | F | 1.4501 | |
| 5 | K | F | -1.2262 | |
| 6 | G | F | -1.6796 | |
| 7 | H | F | -2.3606 | |
| 1 | I | G | 3.3503 | |
| 2 | V | G | 3.8717 | |
| 3 | I | G | 2.6301 | |
| 4 | V | G | 1.7664 | |
| 5 | K | G | -1.2860 | |
| 6 | G | G | -1.6481 | |
| 7 | H | G | -2.0434 | |
| 1 | I | H | 2.7353 | |
| 2 | V | H | 3.5233 | |
| 3 | I | H | 2.6324 | |
| 4 | V | H | 1.9879 | |
| 5 | K | H | -0.7631 | |
| 6 | G | H | -1.3886 | |
| 7 | H | H | -1.8994 |