| Chain sequence(s) |
A: KLVFFAE
C: KLVFFAE B: KLVFFAE E: KLVFFAE D: KLVFFAE G: KLVFFAE F: KLVFFAE H: KLVFFAE input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:38)
[INFO] Main: Simulation completed successfully. (00:01:40)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -1.5619 | |
| 2 | L | A | -0.3316 | |
| 3 | V | A | 0.3711 | |
| 4 | F | A | 0.0000 | |
| 5 | F | A | 0.0453 | |
| 6 | A | A | -1.1578 | |
| 7 | E | A | -2.1394 | |
| 1 | K | B | -1.4459 | |
| 2 | L | B | -0.2840 | |
| 3 | V | B | 0.4435 | |
| 4 | F | B | 0.0000 | |
| 5 | F | B | -0.3159 | |
| 6 | A | B | -1.4196 | |
| 7 | E | B | -2.3611 | |
| 1 | K | C | -1.9634 | |
| 2 | L | C | 0.0000 | |
| 3 | V | C | 0.5825 | |
| 4 | F | C | 0.0000 | |
| 5 | F | C | 1.2158 | |
| 6 | A | C | -0.5413 | |
| 7 | E | C | -1.8238 | |
| 1 | K | D | -1.5609 | |
| 2 | L | D | 0.0000 | |
| 3 | V | D | 0.8648 | |
| 4 | F | D | 0.0000 | |
| 5 | F | D | 0.9539 | |
| 6 | A | D | -0.6829 | |
| 7 | E | D | -1.9004 | |
| 1 | K | E | -1.3541 | |
| 2 | L | E | 0.0330 | |
| 3 | V | E | 0.8041 | |
| 4 | F | E | 0.0000 | |
| 5 | F | E | 0.7226 | |
| 6 | A | E | -0.6286 | |
| 7 | E | E | -1.8671 | |
| 1 | K | F | -1.5986 | |
| 2 | L | F | 0.1073 | |
| 3 | V | F | 1.6242 | |
| 4 | F | F | 0.0000 | |
| 5 | F | F | 0.7799 | |
| 6 | A | F | -0.6983 | |
| 7 | E | F | -2.0321 | |
| 1 | K | G | -1.3705 | |
| 2 | L | G | 0.2321 | |
| 3 | V | G | 1.0988 | |
| 4 | F | G | 0.0000 | |
| 5 | F | G | 0.1596 | |
| 6 | A | G | -0.9903 | |
| 7 | E | G | -2.2568 | |
| 1 | K | H | -1.7226 | |
| 2 | L | H | 0.0000 | |
| 3 | V | H | 0.5496 | |
| 4 | F | H | 0.0000 | |
| 5 | F | H | 0.8797 | |
| 6 | A | H | -0.6709 | |
| 7 | E | H | -1.8120 |