Project name: 5WK2 VHVL

Status: done

Started: 2026-03-30 05:22:10
Settings
Chain sequence(s) H: EVQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIGWVRQMPGKGLEWMGIIDPSDSDTRYSPSFQGQVTISADKSISTAYLQWSSLKASDTAMYYCARVGPADVWDSFDYWGQGTLVTVSS
L: DIVMTQSPDSLAVSLGERATINCKSSQSVLLSPWNSNQLAWYQQKPGQPPKLLIYGASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYLIPSTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:10)
Show buried residues

Minimal score value
-2.6437
Maximal score value
1.1383
Average score
-0.5355
Total score value
-125.2983

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0972
2 V H -1.1791
3 Q H -1.2462
4 L H 0.0000
5 V H 0.5335
6 Q H 0.0000
7 S H -0.3443
8 G H -0.4502
9 A H 0.1841
11 E H 0.2294
12 V H 1.1383
13 K H -0.8790
14 K H -2.0790
15 P H -1.8991
16 G H -1.9000
17 E H -2.3583
18 S H -1.7043
19 L H 0.0000
20 K H -1.3602
21 I H 0.0000
22 S H -0.3013
23 C H 0.0000
24 K H -0.2724
25 G H 0.0000
26 S H -0.6449
27 G H -1.2105
28 Y H -0.5664
29 S H -0.2472
30 F H 0.0000
35 T H -0.7583
36 S H -0.2044
37 Y H 0.1120
38 W H 0.0538
39 I H 0.0000
40 G H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.4856
44 Q H -0.7338
45 M H -0.6686
46 P H -0.8437
47 G H -1.3578
48 K H -2.1970
49 G H -1.3681
50 L H 0.0000
51 E H -0.7669
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 I H 0.0000
56 I H 0.0000
57 D H -1.0894
58 P H 0.0000
59 S H -1.4813
62 D H -2.2542
63 S H -1.6490
64 D H -1.4367
65 T H -0.9130
66 R H -0.9938
67 Y H -0.6335
68 S H 0.0000
69 P H -1.0488
70 S H -0.8192
71 F H -1.0451
72 Q H -1.8481
74 G H -1.6020
75 Q H -1.8553
76 V H 0.0000
77 T H -0.8000
78 I H 0.0000
79 S H -0.5238
80 A H -0.7660
81 D H -0.7633
82 K H -1.0206
83 S H 0.0459
84 I H 1.1029
85 S H -0.0300
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3807
89 L H 0.0000
90 Q H -1.1199
91 W H 0.0000
92 S H -1.2025
93 S H -1.5498
94 L H 0.0000
95 K H -1.5037
96 A H -0.8583
97 S H -0.4297
98 D H 0.0000
99 T H 0.0118
100 A H 0.0000
101 M H 0.1353
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 V H 0.0000
108 G H -0.1151
109 P H -0.5451
110 A H -0.5679
111 D H -1.2095
112A V H 0.4429
112 W H 0.3663
113 D H 0.0000
114 S H 0.0000
115 F H 0.0000
116 D H -0.0160
117 Y H 0.1508
118 W H -0.1411
119 G H 0.0000
120 Q H -1.0641
121 G H -0.5020
122 T H 0.0000
123 L H 0.5247
124 V H 0.0000
125 T H 0.2336
126 V H 0.0000
127 S H -0.7619
128 S H -0.9772
1 D L -1.4190
2 I L 0.0000
3 V L 0.7115
4 M L 0.0000
5 T L -0.7493
6 Q L 0.0000
7 S L -1.3812
8 P L -1.3894
9 D L -2.2995
10 S L -1.4766
11 L L -0.7814
12 A L -0.4982
13 V L 0.0000
14 S L -0.8559
15 L L 0.0452
16 G L -1.1598
17 E L -2.3573
18 R L -2.6437
19 A L 0.0000
20 T L -0.6492
21 I L 0.0000
22 N L -1.5988
23 C L 0.0000
24 K L -2.3463
25 S L 0.0000
26 S L -0.9687
27 Q L -1.5548
28 S L -0.9728
29 V L 0.0000
30 L L 0.0605
31 L L 0.2846
32 S L -0.3590
33 P L -0.1374
34 W L 0.2551
35 N L -0.8340
36 S L -0.2536
37 N L -0.1399
38 Q L 0.0000
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.3290
46 P L -1.0006
47 G L -1.4158
48 Q L -2.0368
49 P L -1.2793
50 P L 0.0000
51 K L -1.0619
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1689
56 G L -0.2048
57 A L 0.0000
65 S L -0.5072
66 T L -0.4197
67 R L -1.1693
68 E L -0.8448
69 S L -0.7378
70 G L -0.9828
71 V L 0.0000
72 P L -1.3364
74 D L -2.1740
75 R L -1.5882
76 F L 0.0000
77 S L -0.8200
78 G L -0.4760
79 S L -0.7704
80 G L -1.3303
83 S L -1.0330
84 G L -0.9287
85 T L -1.6378
86 D L -2.3602
87 F L 0.0000
88 T L -1.0375
89 L L 0.0000
90 T L -0.6370
91 I L 0.0000
92 S L -1.6800
93 S L -1.7423
94 L L 0.0000
95 Q L -1.2447
96 A L -0.5198
97 E L -1.2888
98 D L 0.0000
99 V L -0.4074
100 A L 0.0000
101 V L -0.5551
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 Y L 0.8468
109 L L 0.7436
114 I L 0.3792
115 P L -0.1971
116 S L 0.0000
117 T L 0.1102
118 F L 0.0000
119 G L 0.0000
120 Q L -1.3211
121 G L 0.0000
122 T L 0.0000
123 K L -1.4099
124 V L 0.0000
125 E L -0.9035
126 I L -0.0327
127 K L -1.2803
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Laboratory of Theory of Biopolymers 2018