Project name: 7D85

Status: done

Started: 2026-03-29 09:52:37
Settings
Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGFTFSDYDMSWVRQAPGKGLEWVSTIDLDSGSIYYADSVQGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDLHMGPEGPFDYWGQGTLVTVSS
L: QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNSVSWYQQLPGTAPKLLIYSDNHRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCQGWDTSLSGHVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues

Minimal score value
-2.5902
Maximal score value
1.4251
Average score
-0.5368
Total score value
-124.0065

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0440
2 V H -0.9459
3 Q H -0.9137
4 L H 0.0000
5 L H 0.8712
6 E H 0.2643
7 S H -0.2204
8 G H -0.6254
9 G H 0.1695
11 G H 0.7661
12 L H 1.3689
13 V H -0.0111
14 Q H -1.3066
15 P H -1.4815
16 G H -1.3322
17 G H -0.9539
18 S H -1.0175
19 L H -0.4725
20 R H -1.2840
21 L H 0.0000
22 S H -0.2720
23 C H 0.0000
24 A H -0.1719
25 A H 0.0000
26 S H -1.0088
27 G H -1.2742
28 F H -0.7341
29 T H -0.6346
30 F H 0.0000
35 S H -1.5168
36 D H -1.4726
37 Y H -0.6363
38 D H -0.6379
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6312
45 A H -1.0128
46 P H -0.8126
47 G H -1.4525
48 K H -2.2462
49 G H -1.4657
50 L H 0.0000
51 E H -0.9341
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 T H 0.0000
56 I H 0.0000
57 D H -0.7106
58 L H -1.1392
59 D H -2.1550
62 S H -1.0385
63 G H -0.7805
64 S H 0.0423
65 I H 1.1845
66 Y H 0.7476
67 Y H -0.2604
68 A H 0.0000
69 D H -2.1386
70 S H -1.6310
71 V H 0.0000
72 Q H -1.9166
74 G H -1.4531
75 R H -1.2768
76 F H 0.0000
77 T H -0.4632
78 I H 0.0000
79 S H -0.1853
80 R H -1.0726
81 D H -1.5851
82 N H -2.0009
83 S H -1.5673
84 K H -2.4104
85 N H -1.8993
86 T H -0.9976
87 L H 0.0000
88 Y H -0.3409
89 L H 0.0000
90 Q H -0.9512
91 M H 0.0000
92 N H -1.2089
93 S H -1.1601
94 L H 0.0000
95 R H -1.8397
96 A H -1.5153
97 E H -2.0905
98 D H 0.0000
99 T H -0.3044
100 A H 0.0000
101 V H 0.6887
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 D H 0.0000
108 L H -0.1544
109 H H -0.6134
110 M H 0.1670
111 G H -0.3954
112A P H -0.6182
112 E H -0.7571
113 G H -0.5912
114 P H 0.0000
115 F H 0.0000
116 D H 0.0256
117 Y H 0.6002
118 W H 0.1259
119 G H 0.0000
120 Q H -0.7779
121 G H -0.0546
122 T H 0.4438
123 L H 1.4251
124 V H 0.0000
125 T H 0.3521
126 V H 0.0000
127 S H -0.6843
128 S H -0.6053
1 Q L -0.8958
2 S L -0.0733
3 V L 1.1467
4 L L 0.0000
5 T L 0.0947
6 Q L -0.3712
7 P L -0.5962
8 P L -0.7689
9 S L -0.7694
11 A L -0.4858
12 S L -0.1019
13 G L 0.0000
14 T L -0.3489
15 P L -1.1917
16 G L -1.8693
17 Q L -2.4447
18 R L -2.5902
19 V L 0.0000
20 T L -0.6564
21 I L 0.0000
22 S L -0.3886
23 C L 0.0000
24 S L -0.2611
25 G L -0.0650
26 S L -0.2600
27 S L -0.6859
28 S L -0.3406
29 N L 0.0000
30 I L 0.0000
35 G L -1.0042
36 S L -0.6618
37 N L -0.5296
38 S L -0.7400
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.6154
45 L L -0.5837
46 P L -0.5422
47 G L -0.6452
48 T L -0.6097
49 A L -0.5528
50 P L 0.0000
51 K L -0.7165
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -1.1247
56 S L -1.2783
57 D L -1.5588
65 N L -2.2275
66 H L -2.0832
67 R L -2.0215
68 P L -0.9171
69 S L -0.7593
70 G L -0.9563
71 V L 0.0000
72 P L -1.4182
74 D L -2.2351
75 R L -1.7116
76 F L 0.0000
77 S L -1.3640
78 G L -1.2749
79 S L -1.1412
80 K L -1.2305
83 S L -0.8469
84 G L -0.9568
85 T L -0.8195
86 S L -0.7149
87 A L 0.0000
88 S L -0.6035
89 L L 0.0000
90 A L -0.7359
91 I L 0.0000
92 S L -1.9882
93 G L -1.9058
94 L L 0.0000
95 R L -2.3823
96 S L -1.7413
97 E L -2.4409
98 D L 0.0000
99 E L -1.3494
100 A L 0.0000
101 D L -0.8946
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 G L 0.0000
107 W L 0.1333
108 D L 0.0000
109 T L -0.1102
110 S L -0.0123
113 L L 0.1385
114 S L -0.0406
115 G L 0.0000
116 H L 0.0556
117 V L 0.0000
118 F L 0.0000
119 G L 0.0000
120 G L -0.7315
121 G L 0.0000
122 T L 0.0000
123 K L -1.1852
124 L L 0.0000
125 T L -0.1916
126 V L 0.0265
127 L L 1.3428
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Laboratory of Theory of Biopolymers 2018