Project name: query_structure

Status: done

Started: 2026-03-17 00:36:03
Settings
Chain sequence(s) A: KGEELFTGVVPILVELDGDVNGHKFSVSSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFGGGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISSFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGI
C: QVQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYWGQGTQVTVS
B: KGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFGGGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGI
D: QVQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYWGQGTQVTVSS
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:14:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:14:58)
Show buried residues

Minimal score value
-4.0139
Maximal score value
1.4391
Average score
-0.864
Total score value
-584.903

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 K A -2.2280
4 G A 0.0000
5 E A -1.9228
6 E A -2.2281
7 L A -0.7876
8 F A 0.0000
9 T A -0.3168
10 G A 0.5108
11 V A 1.3108
12 V A 0.0000
13 P A -1.0365
14 I A 0.0000
15 L A -1.1409
16 V A 0.0000
17 E A -2.0064
18 L A 0.0000
19 D A -3.3113
20 G A 0.0000
21 D A -2.4282
22 V A 0.0000
23 N A -1.7462
24 G A -1.8512
25 H A -2.2034
26 K A -2.8778
27 F A 0.0000
28 S A -1.7010
29 V A 0.0000
30 S A -1.0571
31 G A 0.0000
32 E A -2.2884
33 G A -1.7616
34 E A -1.6569
35 G A 0.0000
36 D A 0.2422
37 A A 0.0000
38 T A 0.4208
39 Y A 1.1316
40 G A 0.0000
41 K A -0.0991
42 L A 0.0000
43 T A -0.7435
44 L A 0.0000
45 K A -1.0788
46 F A 0.0000
47 I A -1.0661
48 C A 0.0000
49 T A -0.7743
50 T A -1.1750
51 G A -1.7118
52 K A -2.2861
53 L A 0.0000
54 P A -1.2104
55 V A 0.0000
56 P A -0.4460
57 W A 0.0000
58 P A 0.0000
59 T A 0.0000
60 L A 0.0000
61 V A 0.0000
62 T A 0.0001
63 T A 0.0000
64 F A 0.0000
68 V A -0.0105
69 Q A -0.1339
70 C A 0.0000
71 F A 0.0000
72 S A 0.0000
73 R A -0.8008
74 Y A 0.0000
75 P A -1.7750
76 D A -3.0636
77 H A -2.2977
78 M A 0.0000
79 K A -3.1777
80 R A -3.0461
81 H A -1.6984
82 D A 0.0000
83 F A 0.0000
84 F A 0.0000
85 K A 0.0000
86 S A -1.1653
87 A A 0.0000
88 M A 0.0000
89 P A -1.6408
90 E A -2.1945
91 G A 0.0000
92 Y A 0.0000
93 V A -0.5855
94 Q A 0.0000
95 E A -2.0282
96 R A 0.0000
97 T A -0.8707
98 I A 0.0000
99 S A -1.1175
100 F A 0.0000
101 K A -2.6655
102 D A -2.9617
103 D A -2.5347
104 G A 0.0000
105 N A -1.1802
106 Y A 0.0000
107 K A -2.2487
108 T A 0.0000
109 R A -2.9678
110 A A 0.0000
111 E A -1.6705
112 V A 0.0000
113 K A -1.2867
114 F A -1.3181
115 E A -1.5060
116 G A -1.6302
117 D A -2.0979
118 T A -1.4003
119 L A 0.0000
120 V A 0.0000
121 N A 0.0000
122 R A -2.2741
123 I A 0.0000
124 E A -3.8858
125 L A 0.0000
126 K A -2.8145
127 G A 0.0000
128 I A -0.6717
129 D A -1.6108
130 F A 0.0000
131 K A -2.7059
132 E A -3.6631
133 D A -3.2296
134 G A -2.3863
135 N A -2.0191
136 I A 0.0000
137 L A -1.6539
138 G A -2.1396
139 H A -2.1124
140 K A -2.2186
141 L A 0.0000
142 E A -0.9914
143 Y A -0.3146
144 N A -0.0051
145 Y A 0.0000
146 N A 0.0000
147 S A -0.4224
148 H A 0.0000
149 N A -1.3869
150 V A 0.0000
151 Y A -0.2587
152 I A 0.0000
153 T A -1.1584
154 A A -1.6989
155 D A 0.0000
156 K A -3.1973
157 Q A -3.1268
158 K A -3.3983
159 N A -2.9002
160 G A 0.0000
161 I A 0.0000
162 K A -1.4644
163 A A 0.0000
164 N A -1.2162
165 F A 0.0000
166 K A -1.5195
167 I A 0.0000
168 R A -0.4400
169 H A 0.0000
170 N A 0.0000
171 I A 0.0000
172 E A -2.2860
173 D A -2.3593
174 G A 0.0000
175 S A -0.6578
176 V A -0.4291
177 Q A 0.0000
178 L A -0.9912
179 A A 0.0000
180 D A -1.2554
181 H A 0.0000
182 Y A -0.2953
183 Q A 0.0000
184 Q A -1.1674
185 N A 0.0000
186 T A -0.7429
187 P A -0.9212
188 I A -0.3350
189 G A -1.3170
190 D A -2.1927
191 G A -1.4248
192 P A -0.9204
193 V A -0.5510
194 L A -0.3442
195 L A -0.7041
196 P A 0.0000
197 D A -2.0635
198 N A -1.3507
199 H A 0.0000
200 Y A 0.0381
201 L A 0.0000
202 S A -0.5137
203 T A -0.4684
204 Q A -0.6072
205 S A 0.0000
206 A A 0.1926
207 L A 0.0073
208 S A -0.6716
209 K A -1.5873
210 D A -1.9516
211 P A -1.6991
212 N A -2.3965
213 E A -2.5836
214 K A -3.1018
215 R A -3.2908
216 D A -2.2150
217 H A 0.0000
218 M A 0.0000
219 V A -0.3309
220 L A 0.0000
221 L A 0.3389
222 E A 0.0662
223 F A 0.4027
224 V A 0.0000
225 T A -0.2183
226 A A 0.0000
227 A A 0.0726
228 G A 0.3349
229 I A 1.1662
3 K B -2.2848
4 G B 0.0000
5 E B -2.0292
6 E B -2.3055
7 L B -0.6732
8 F B 0.0000
9 T B -0.2867
10 G B 0.5816
11 V B 1.4391
12 V B 0.0000
13 P B -0.8277
14 I B 0.0000
15 L B -1.0338
16 V B 0.0000
17 E B -2.1451
18 L B 0.0000
19 D B -3.3413
20 G B 0.0000
21 D B -2.3460
22 V B 0.0000
23 N B -1.7620
24 G B -1.4279
25 H B -1.8524
26 K B -2.7234
27 F B 0.0000
28 S B -1.8301
29 V B 0.0000
30 S B -1.1553
31 G B 0.0000
32 E B -2.2516
33 G B -1.4628
34 E B -1.2977
35 G B 0.0000
36 D B 0.0000
37 A B 0.0000
38 T B 0.3203
39 Y B 0.9820
40 G B 0.0000
41 K B -0.0578
42 L B 0.0000
43 T B -0.6600
44 L B 0.0000
45 K B -1.3122
46 F B 0.0000
47 I B -1.1885
48 C B 0.0000
49 T B -0.9837
50 T B -1.4000
51 G B -1.7338
52 K B -2.2849
53 L B 0.0000
54 P B -1.2016
55 V B 0.0000
56 P B 0.0000
57 W B 0.0000
58 P B 0.0000
59 T B 0.0000
60 L B 0.0000
61 V B 0.0000
62 T B -0.0009
63 T B 0.0000
64 F B 0.0000
68 V B -0.0293
69 Q B -0.1534
70 C B 0.0000
71 F B 0.0000
72 S B 0.0000
73 R B -1.0357
74 Y B 0.0000
75 P B -1.9014
76 D B -3.0796
77 H B -2.2941
78 M B 0.0000
79 K B -3.1216
80 R B -2.9667
81 H B -1.6169
82 D B 0.0000
83 F B 0.0000
84 F B 0.0000
85 K B 0.0000
86 S B -1.1422
87 A B 0.0000
88 M B 0.0000
89 P B -1.3770
90 E B -1.8957
91 G B 0.0000
92 Y B 0.0000
93 V B -0.5235
94 Q B 0.0000
95 E B -2.2286
96 R B 0.0000
97 T B -0.8703
98 I B 0.0000
99 S B -0.8933
100 F B 0.0000
101 K B -2.0814
102 D B -2.9903
103 D B -2.5996
104 G B 0.0000
105 N B -1.2200
106 Y B 0.0000
107 K B -2.2820
108 T B 0.0000
109 R B -3.2959
110 A B 0.0000
111 E B -1.6950
112 V B 0.0000
113 K B -1.1881
114 F B -1.2916
115 E B -1.5882
116 G B -1.7087
117 D B -2.1075
118 T B -1.3486
119 L B 0.0000
120 V B 0.0000
121 N B 0.0000
122 R B -2.5096
123 I B 0.0000
124 E B -4.0139
125 L B 0.0000
126 K B -2.7648
127 G B 0.0000
128 I B -0.8507
129 D B -2.0853
130 F B 0.0000
131 K B -3.2958
132 E B -3.5546
133 D B -3.3108
134 G B -2.4601
135 N B -2.1148
136 I B 0.0000
137 L B -1.8364
138 G B -2.1791
139 H B -2.1194
140 K B -2.1337
141 L B 0.0000
142 E B -1.0228
143 Y B -0.4020
144 N B -0.1087
145 Y B 0.0000
146 N B 0.0000
147 S B -0.4841
148 H B 0.0000
149 N B -1.3121
150 V B 0.0000
151 Y B -0.0798
152 I B 0.0000
153 T B -1.2204
154 A B -1.7714
155 D B -2.2296
156 K B -3.0597
157 Q B -2.8561
158 K B -2.8403
159 N B -2.4643
160 G B 0.0000
161 I B 0.0000
162 K B -1.6437
163 A B 0.0000
164 N B -0.8710
165 F B 0.0000
166 K B -1.2641
167 I B 0.0000
168 R B -0.4653
169 H B 0.0000
170 N B 0.0000
171 I B 0.0000
172 E B -2.2203
173 D B -1.9662
174 G B 0.0000
175 S B -0.5504
176 V B -0.2682
177 Q B 0.0000
178 L B -0.6560
179 A B 0.0000
180 D B -0.8408
181 H B 0.0000
182 Y B -0.1060
183 Q B 0.0000
184 Q B -1.2489
185 N B 0.0000
186 T B -0.5368
187 P B -0.5720
188 I B 0.0978
189 G B -1.1701
190 D B -2.1031
191 G B -1.3702
192 P B -0.7055
193 V B -0.2873
194 L B -0.0883
195 L B -0.4978
196 P B 0.0000
197 D B -2.0367
198 N B -1.4125
199 H B 0.0000
200 Y B 0.1574
201 L B 0.0000
202 S B -0.5153
203 T B -0.5794
204 Q B -0.6424
205 S B 0.0000
206 A B 0.0999
207 L B 0.0000
208 S B -0.7952
209 K B -1.9149
210 D B -2.1686
211 P B -1.8162
212 N B -2.4463
213 E B -2.7144
214 K B -3.3160
215 R B -3.3840
216 D B -2.2974
217 H B 0.0000
218 M B 0.0000
219 V B -0.4658
220 L B 0.0000
221 L B 0.3529
222 E B 0.0365
223 F B 0.3103
224 V B 0.0000
225 T B -0.3142
226 A B 0.0000
227 A B 0.2186
228 G B 0.4211
229 I B 1.2914
1 Q C -1.5056
2 V C -0.8733
3 Q C -1.1968
4 L C 0.0000
5 V C 0.3589
6 E C 0.0000
7 S C -0.7164
8 G C -0.9114
9 G C -0.6781
10 A C 0.0410
11 L C 1.0093
12 V C 0.0000
13 Q C -1.5198
14 P C -1.8958
15 G C -1.5738
16 G C -1.0760
17 S C -1.2391
18 L C -1.0016
19 R C -2.2731
20 L C 0.0000
21 S C -0.5548
22 C C 0.0000
23 A C -0.2536
24 A C -0.5274
25 S C -0.8042
26 G C -0.9620
27 F C 0.0000
28 P C -1.4240
29 V C 0.0000
30 N C -2.2464
31 R C -2.2247
32 Y C -0.8252
33 S C 0.0000
34 M C 0.0000
35 R C 0.0000
36 W C 0.0000
37 Y C 0.0000
38 R C -1.2653
39 Q C -1.9329
40 A C -1.8714
41 P C -1.3957
42 G C -1.9327
43 K C -3.2452
44 E C -3.4219
45 R C -2.4991
46 E C -2.0391
47 W C 0.0000
48 V C 0.0000
49 A C 0.0000
50 G C 0.0000
51 M C -1.2402
52 S C 0.0000
52A S C -1.6527
53 A C -1.6515
54 G C -2.1514
55 D C -2.8049
56 R C -3.0963
57 S C -1.6585
58 S C -1.2140
59 Y C -1.2086
60 E C -1.9344
61 D C -2.8416
62 S C -1.9990
63 V C 0.0000
64 K C -2.8032
65 G C -1.8085
66 R C -1.4953
67 F C 0.0000
68 T C -1.0515
69 I C 0.0000
70 S C -0.6932
71 R C -1.5085
72 D C -2.4143
73 D C -2.9256
74 A C -1.9819
75 R C -2.6559
76 N C -2.1264
77 T C 0.0000
78 V C 0.0000
79 Y C -0.8176
80 L C 0.0000
81 Q C -1.7189
82 M C 0.0000
82A N C -1.5899
82B S C -1.3783
82C L C 0.0000
83 K C -2.8983
84 P C -2.2692
85 E C -2.5744
86 D C 0.0000
87 T C -1.0635
88 A C 0.0000
89 V C -0.5840
90 Y C 0.0000
91 Y C -0.2855
92 C C 0.0000
93 N C 0.0000
94 V C 0.0000
95 N C 0.0000
96 V C 0.1917
97 G C -0.0091
98 F C 0.2871
101 E C 0.0000
102 Y C 0.3439
103 W C 0.2123
104 G C -0.2643
105 Q C -0.9378
106 G C 0.0000
107 T C 0.0000
108 Q C -0.9967
109 V C 0.0000
110 T C -0.4094
111 V C 0.0000
112 S C -0.9460
1 Q D -1.4704
2 V D -0.8473
3 Q D -1.2789
4 L D 0.0000
5 V D 0.2448
6 E D 0.0000
7 S D -0.7622
8 G D -1.1538
9 G D -0.7280
10 A D 0.1610
11 L D 1.1746
12 V D 0.0864
13 Q D -1.3125
14 P D -1.7017
15 G D -1.3703
16 G D -0.8951
17 S D -1.0367
18 L D -0.8122
19 R D -2.1833
20 L D 0.0000
21 S D -0.5998
22 C D 0.0000
23 A D -0.3510
24 A D -0.5344
25 S D -0.9137
26 G D -0.9484
27 F D 0.0000
28 P D -1.3380
29 V D 0.0000
30 N D -1.8483
31 R D -2.0670
32 Y D -0.8140
33 S D 0.0000
34 M D 0.0000
35 R D 0.0000
36 W D 0.0000
37 Y D 0.0000
38 R D -1.3092
39 Q D -2.0649
40 A D -2.0456
41 P D -1.4300
42 G D -1.9449
43 K D -3.3155
44 E D -3.4688
45 R D -2.6324
46 E D -2.0725
47 W D 0.0000
48 V D 0.0000
49 A D 0.0000
50 G D 0.0000
51 M D -0.9089
52 S D 0.0000
52A S D -1.4813
53 A D -1.4281
54 G D -1.8564
55 D D -2.3112
56 R D -2.0559
57 S D -1.1517
58 S D -0.6528
59 Y D -0.7869
60 E D -1.3161
61 D D -2.2250
62 S D -1.5954
63 V D 0.0000
64 K D -2.5752
65 G D -1.6425
66 R D -1.4198
67 F D 0.0000
68 T D -0.9838
69 I D 0.0000
70 S D -0.6345
71 R D -1.4114
72 D D -2.2390
73 D D -2.9982
74 A D -1.9977
75 R D -2.6972
76 N D -2.0693
77 T D 0.0000
78 V D 0.0000
79 Y D -0.7075
80 L D 0.0000
81 Q D -1.5570
82 M D 0.0000
82A N D -1.4265
82B S D -1.1817
82C L D 0.0000
83 K D -2.1080
84 P D -1.7952
85 E D -2.2631
86 D D 0.0000
87 T D -0.8260
88 A D 0.0000
89 V D -0.5489
90 Y D 0.0000
91 Y D -0.2912
92 C D 0.0000
93 N D 0.0000
94 V D 0.0000
95 N D 0.2364
96 V D 0.0621
97 G D -0.0826
98 F D 0.2009
101 E D 0.0000
102 Y D 0.3811
103 W D 0.1680
104 G D -0.3362
105 Q D -1.0091
106 G D 0.0000
107 T D 0.0000
108 Q D -0.9749
109 V D 0.0000
110 T D -0.1809
111 V D 0.0000
112 S D -0.8240
113 S D -0.4958
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Laboratory of Theory of Biopolymers 2018