Project name: 6R8X

Status: done

Started: 2026-03-30 05:49:55
Settings
Chain sequence(s) H: QVQLLESGGGLVQPGGSLRLSCAASGFTFSTAAMSWVRQAPGKGLEWVSGISGSGSSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARELSYLYSGYYFDYWGQGTLVTVSS
L: QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNDVSWYQQLPGTAPKLLIYKNYNRPSGVPDRFSGSKSGTSASLAISGLQSEDEADYYCSAWDQRQFDVVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:54)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-2.5541
Maximal score value
2.8123
Average score
-0.4311
Total score value
-100.0101

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3958
2 V H -0.7318
3 Q H -0.6288
4 L H 0.0000
5 L H 0.8314
6 E H 0.2101
7 S H -0.2675
8 G H -0.6365
9 G H 0.1713
11 G H 0.6808
12 L H 1.3302
13 V H 0.0000
14 Q H -1.3725
15 P H -1.4619
16 G H -1.5844
17 G H -1.3616
18 S H -1.4486
19 L H -1.0096
20 R H -1.7297
21 L H 0.0000
22 S H -0.3425
23 C H 0.0000
24 A H -0.1368
25 A H 0.0000
26 S H -0.6710
27 G H -0.8937
28 F H -0.3294
29 T H -0.2228
30 F H 0.0000
35 S H -0.6280
36 T H -0.2559
37 A H 0.0000
38 A H -0.0381
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6166
45 A H -1.0293
46 P H -0.8119
47 G H -1.4514
48 K H -2.2590
49 G H -1.5159
50 L H 0.0000
51 E H -0.9437
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 G H 0.0000
56 I H 0.0000
57 S H -0.1917
58 G H -0.4806
59 S H -0.6482
62 G H -0.6500
63 S H -0.4479
64 S H -0.0176
65 T H 0.4998
66 Y H 1.0965
67 Y H -0.0862
68 A H 0.0000
69 D H -2.4337
70 S H -1.6894
71 V H 0.0000
72 K H -2.3583
74 G H -1.8052
75 R H -1.8537
76 F H 0.0000
77 T H -0.7880
78 I H 0.0000
79 S H -0.4513
80 R H -0.9846
81 D H -1.5222
82 N H -1.7669
83 S H -1.5950
84 K H -2.3413
85 N H -1.6653
86 T H -0.9817
87 L H 0.0000
88 Y H -0.4459
89 L H 0.0000
90 Q H -1.3984
91 M H 0.0000
92 N H -2.1273
93 S H -1.5816
94 L H 0.0000
95 R H -2.2324
96 A H -1.6506
97 E H -2.1555
98 D H 0.0000
99 T H -0.3819
100 A H 0.0000
101 V H 0.7649
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.0149
107 E H 0.0000
108 L H 0.8071
109 S H 1.3029
110 Y H 2.4668
111 L H 2.8123
111A Y H 2.2537
112A S H 1.2782
112 G H 0.9413
113 Y H 0.7925
114 Y H 0.0000
115 F H 0.0000
116 D H -0.0236
117 Y H 0.2289
118 W H -0.0565
119 G H 0.0000
120 Q H -0.7971
121 G H -0.0655
122 T H 0.4763
123 L H 1.5261
124 V H 0.0000
125 T H 0.2881
126 V H 0.0000
127 S H -0.7300
128 S H -0.5612
1 Q L -0.8150
2 S L -0.1310
3 V L 1.1545
4 L L 0.0000
5 T L 0.1288
6 Q L -0.3742
7 P L -0.6159
8 P L -0.8504
9 S L -0.8761
11 A L -0.5338
12 S L -0.3173
13 G L 0.0000
14 T L -0.2384
15 P L -0.9462
16 G L -1.6993
17 Q L -2.3410
18 R L -2.5541
19 V L -1.1304
20 T L -0.4899
21 I L 0.0000
22 S L -0.3694
23 C L 0.0000
24 S L -0.1849
25 G L 0.0383
26 S L -0.3502
27 S L -0.8922
28 S L -1.1063
29 N L 0.0000
30 I L 0.0000
35 G L -0.8519
36 S L -0.7666
37 N L -0.7998
38 D L -0.6458
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 L L -0.6169
46 P L -0.4735
47 G L -0.6437
48 T L -0.6209
49 A L -0.5820
50 P L 0.0000
51 K L -0.8952
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.2643
56 K L -0.5071
57 N L -0.4268
65 Y L 0.3717
66 N L -0.5697
67 R L -1.3459
68 P L -0.7029
69 S L -0.7522
70 G L -0.9478
71 V L 0.0000
72 P L -1.4439
74 D L -2.2654
75 R L -1.6050
76 F L 0.0000
77 S L -0.6451
78 G L -0.1058
79 S L -0.3615
80 K L -0.9734
83 S L -0.8629
84 G L -0.9028
85 T L -0.7397
86 S L -0.6953
87 A L 0.0000
88 S L -0.3079
89 L L 0.0000
90 A L -0.5612
91 I L 0.0000
92 S L -1.8234
93 G L -1.7109
94 L L 0.0000
95 Q L -1.5502
96 S L -1.3290
97 E L -2.1737
98 D L 0.0000
99 E L -1.2967
100 A L 0.0000
101 D L -1.1808
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 S L 0.0000
106 A L 0.0000
107 W L -0.1874
108 D L 0.0000
109 Q L -1.5685
110 R L -2.2944
113 Q L -1.5149
114 F L 0.6915
115 D L -0.1547
116 V L 0.0000
117 V L 0.0000
118 F L 0.0000
119 G L 0.0000
120 G L -0.7323
121 G L 0.0000
122 T L 0.0000
123 K L -1.4284
124 L L 0.0000
125 T L -0.3520
126 V L 0.1679
127 L L 1.4301
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018