Project name: query_structure

Status: done

Started: 2026-03-16 19:55:44
Settings
Chain sequence(s) A: APGECKHGRCPPGICCSQYGYCGTGPAYCG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:27)
Show buried residues

Minimal score value
-2.9886
Maximal score value
1.0368
Average score
-0.3788
Total score value
-11.3635

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.5176
2 P A -0.6008
3 G A -0.5747
4 E A -1.5637
5 C A -1.9036
6 K A -2.9886
7 H A -2.7602
8 G A -2.2434
9 R A -2.7106
10 C A 0.0000
11 P A -0.6001
12 P A -0.6215
13 G A -0.2020
14 I A 0.5672
15 C A 0.6068
16 C A 0.3659
17 S A 0.0000
18 Q A -0.1207
19 Y A 0.9606
20 G A 0.0040
21 Y A 0.4773
22 C A 0.2203
23 G A 0.6222
24 T A 0.3527
25 G A 0.1448
26 P A -0.0752
27 A A 0.3091
28 Y A 1.0368
29 C A 0.6714
30 G A -0.2199
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018