| Chain sequence(s) |
A: FYGHKYF
C: FYGHKYF B: FYGHKYF E: FYGHKYF D: FYGHKYF G: FYGHKYF F: FYGHKYF I: FYGHKYF H: FYGHKYF K: FYGHKYF J: FYGHKYF L: FYGHKYF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:30)
[INFO] Main: Simulation completed successfully. (00:01:32)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.9715 | |
| 2 | Y | A | 0.0000 | |
| 3 | G | A | 0.8260 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -0.2441 | |
| 6 | Y | A | 1.6498 | |
| 7 | F | A | 3.3364 | |
| 1 | F | B | 4.0095 | |
| 2 | Y | B | 0.0000 | |
| 3 | G | B | 0.7916 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -0.3668 | |
| 6 | Y | B | 1.6461 | |
| 7 | F | B | 3.4824 | |
| 1 | F | C | 3.9561 | |
| 2 | Y | C | 2.4917 | |
| 3 | G | C | 0.8463 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -0.2846 | |
| 6 | Y | C | 0.0000 | |
| 7 | F | C | 3.3587 | |
| 1 | F | D | 3.9075 | |
| 2 | Y | D | 0.0000 | |
| 3 | G | D | 0.0000 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -0.2449 | |
| 6 | Y | D | 1.4793 | |
| 7 | F | D | 3.3624 | |
| 1 | F | E | 3.6246 | |
| 2 | Y | E | 2.0780 | |
| 3 | G | E | 0.5011 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -0.4828 | |
| 6 | Y | E | 1.1575 | |
| 7 | F | E | 2.8135 | |
| 1 | F | F | 2.9036 | |
| 2 | Y | F | 1.4929 | |
| 3 | G | F | -0.0713 | |
| 4 | H | F | -1.1922 | |
| 5 | K | F | -1.2674 | |
| 6 | Y | F | 0.7172 | |
| 7 | F | F | 2.3808 | |
| 1 | F | G | 2.9538 | |
| 2 | Y | G | 1.6214 | |
| 3 | G | G | -0.0092 | |
| 4 | H | G | -1.1288 | |
| 5 | K | G | -1.0993 | |
| 6 | Y | G | 1.1127 | |
| 7 | F | G | 2.4781 | |
| 1 | F | H | 3.6007 | |
| 2 | Y | H | 2.3546 | |
| 3 | G | H | 0.0000 | |
| 4 | H | H | 0.0000 | |
| 5 | K | H | -0.3744 | |
| 6 | Y | H | 1.4813 | |
| 7 | F | H | 3.2919 | |
| 1 | F | I | 4.0034 | |
| 2 | Y | I | 2.6333 | |
| 3 | G | I | 0.8583 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -0.3470 | |
| 6 | Y | I | 1.6364 | |
| 7 | F | I | 3.5049 | |
| 1 | F | J | 4.0712 | |
| 2 | Y | J | 0.0000 | |
| 3 | G | J | 0.8250 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -0.4706 | |
| 6 | Y | J | 1.4803 | |
| 7 | F | J | 3.3673 | |
| 1 | F | K | 3.5119 | |
| 2 | Y | K | 2.7153 | |
| 3 | G | K | 0.6244 | |
| 4 | H | K | -0.9844 | |
| 5 | K | K | -1.0183 | |
| 6 | Y | K | 1.3981 | |
| 7 | F | K | 2.8610 | |
| 1 | F | L | 3.4888 | |
| 2 | Y | L | 2.6738 | |
| 3 | G | L | 0.5593 | |
| 4 | H | L | -1.0074 | |
| 5 | K | L | -0.8212 | |
| 6 | Y | L | 1.7293 | |
| 7 | F | L | 3.0701 |