| Chain sequence(s) |
A: GKGHKGH
C: GKGHKGH B: GKGHKGH E: GKGHKGH D: GKGHKGH G: GKGHKGH F: GKGHKGH I: GKGHKGH H: GKGHKGH K: GKGHKGH J: GKGHKGH L: GKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:18)
[INFO] Main: Simulation completed successfully. (00:06:22)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.7251 | |
| 2 | K | A | -2.9382 | |
| 3 | G | A | -2.3185 | |
| 4 | H | A | -2.3759 | |
| 5 | K | A | -2.6327 | |
| 6 | G | A | -2.4083 | |
| 7 | H | A | -1.9906 | |
| 1 | G | B | -1.7021 | |
| 2 | K | B | -2.9492 | |
| 3 | G | B | -2.4035 | |
| 4 | H | B | -2.5656 | |
| 5 | K | B | -2.8553 | |
| 6 | G | B | -2.5817 | |
| 7 | H | B | -2.0891 | |
| 1 | G | C | -1.7475 | |
| 2 | K | C | -2.3672 | |
| 3 | G | C | -2.2222 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -2.2625 | |
| 6 | G | C | 0.0000 | |
| 7 | H | C | -1.9298 | |
| 1 | G | D | -1.5004 | |
| 2 | K | D | -1.7388 | |
| 3 | G | D | -1.3936 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -1.8804 | |
| 6 | G | D | 0.0000 | |
| 7 | H | D | -1.5637 | |
| 1 | G | E | -1.2967 | |
| 2 | K | E | -1.5758 | |
| 3 | G | E | -1.4333 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -1.8643 | |
| 6 | G | E | 0.0000 | |
| 7 | H | E | -1.4076 | |
| 1 | G | F | -1.4325 | |
| 2 | K | F | -1.8437 | |
| 3 | G | F | -1.7455 | |
| 4 | H | F | 0.0000 | |
| 5 | K | F | -2.0520 | |
| 6 | G | F | 0.0000 | |
| 7 | H | F | -1.5914 | |
| 1 | G | G | -1.3354 | |
| 2 | K | G | -2.0969 | |
| 3 | G | G | -1.9889 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -2.6621 | |
| 6 | G | G | 0.0000 | |
| 7 | H | G | -1.9006 | |
| 1 | G | H | -1.5926 | |
| 2 | K | H | -2.2643 | |
| 3 | G | H | -2.1664 | |
| 4 | H | H | -2.1758 | |
| 5 | K | H | -2.7360 | |
| 6 | G | H | 0.0000 | |
| 7 | H | H | -1.8881 | |
| 1 | G | I | -1.5612 | |
| 2 | K | I | -2.0903 | |
| 3 | G | I | -2.0217 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -2.3747 | |
| 6 | G | I | 0.0000 | |
| 7 | H | I | -1.9733 | |
| 1 | G | J | -1.3514 | |
| 2 | K | J | -1.5582 | |
| 3 | G | J | -1.3349 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -1.8595 | |
| 6 | G | J | 0.0000 | |
| 7 | H | J | -1.6289 | |
| 1 | G | K | -1.4653 | |
| 2 | K | K | -1.7187 | |
| 3 | G | K | -1.3686 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -1.7817 | |
| 6 | G | K | 0.0000 | |
| 7 | H | K | -1.5145 | |
| 1 | G | L | -1.7091 | |
| 2 | K | L | -2.2144 | |
| 3 | G | L | -2.0015 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -2.1328 | |
| 6 | G | L | 0.0000 | |
| 7 | H | L | -1.6619 |