Project name: Ghazi_Nb4

Status: done

Started: 2025-07-13 12:56:36
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Chain sequence(s) A: QVQLQESGGGSVQAGGSLRLSCAVRRPTDSRNCMAWFRQAPGEQREAVAGIDIYRITGYAESVKGRFTISQDNAKNTLFLLQMMNLKPTDTGIYFCAAEPKGGYYRGDLVPGQFTYWGRGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:33)
Show buried residues

Minimal score value
-3.106
Maximal score value
1.3014
Average score
-0.8883
Total score value
-112.8179

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.0337
2 V A 0.0000
3 Q A -2.2512
4 L A 0.0000
5 Q A -1.6230
6 E A 0.0000
7 S A -1.0238
8 G A -1.2181
9 G A -1.1582
10 G A -0.9468
11 S A -0.7357
12 V A -0.8692
13 Q A -1.8098
14 A A -1.6573
15 G A -1.6657
16 G A -1.1801
17 S A -1.1581
18 L A -1.0613
19 R A -2.0853
20 L A 0.0000
21 S A -0.9989
22 C A 0.0000
23 A A -0.8647
24 V A 0.0000
25 R A -2.8461
26 R A -3.1060
27 P A -2.4234
28 T A -1.7026
29 D A -1.8381
30 S A -1.7056
31 R A -2.4008
32 N A 0.0000
33 C A 0.0000
34 M A 0.0000
35 A A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -1.6216
40 A A -1.4688
41 P A -1.2523
42 G A -1.8166
43 E A -3.0294
44 Q A -2.7636
45 R A -1.8649
46 E A -1.5449
47 A A -0.6988
48 V A 0.0000
49 A A 0.0000
50 G A 0.0000
51 I A 0.0000
52 D A 0.0000
53 I A 0.2118
54 Y A 1.1063
55 R A -0.1293
56 I A 1.3014
57 T A 0.5290
58 G A -0.7404
59 Y A -1.0721
60 A A -1.6936
61 E A -2.5204
62 S A -1.6080
63 V A 0.0000
64 K A -2.6177
65 G A -1.7430
66 R A -1.5121
67 F A 0.0000
68 T A -0.7378
69 I A 0.0000
70 S A -0.7752
71 Q A -1.4814
72 D A -2.1226
73 N A -1.6316
74 A A -1.2876
75 K A -2.2389
76 N A 0.0000
77 T A -1.3686
78 L A -0.8543
79 F A 0.0000
80 L A 0.0000
81 L A 0.0000
82 Q A -1.1545
83 M A 0.0000
84 M A -1.0213
85 N A -1.8793
86 L A 0.0000
87 K A -1.9677
88 P A -1.0900
89 T A -0.6019
90 D A 0.0000
91 T A -0.5568
92 G A 0.0000
93 I A -0.3574
94 Y A 0.0000
95 F A -0.5414
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 E A -1.2640
100 P A -1.6282
101 K A -2.3488
102 G A -1.2818
103 G A -1.1089
104 Y A 0.2549
105 Y A -0.6519
106 R A -2.1811
107 G A -1.9029
108 D A -1.9465
109 L A 0.0000
110 V A 0.0350
111 P A -0.4500
112 G A -0.6653
113 Q A -1.2990
114 F A 0.0000
115 T A -0.4730
116 Y A -0.0576
117 W A -0.2259
118 G A -1.0971
119 R A -1.9466
120 G A 0.0000
121 T A 0.0000
122 Q A -1.2138
123 V A 0.0000
124 T A -0.7887
125 V A 0.0000
126 S A -1.0741
127 S A -0.9218
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Laboratory of Theory of Biopolymers 2018