Project name: 4EDW VHVL

Status: done

Started: 2026-03-29 09:50:59
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Chain sequence(s) H: QVQLQESGPGLVKPSETLSLTCTVSGFSLIGYDLNWIRQPPGKGLEWIGIIWGDGTTDYNSAVKSRVTISKDTSKNQFSLKLSSVTAADTAVYYCARGGYWYATSYYFDYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQSISNNLNWYQQKPGKAPKLLIYYTSRFHSGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQEHTLPYTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:20)
Show buried residues

Minimal score value
-2.682
Maximal score value
1.8881
Average score
-0.5005
Total score value
-114.1246

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4890
2 V H -0.8626
3 Q H -1.3741
4 L H 0.0000
5 Q H -1.2996
6 E H 0.0000
7 S H -0.6812
8 G H -0.5054
9 P H -0.1761
11 G H 0.1243
12 L H 0.5113
13 V H 0.0000
14 K H -1.4856
15 P H -1.1453
16 S H -1.1791
17 E H -1.5688
18 T H -1.2469
19 L H 0.0000
20 S H -0.9325
21 L H 0.0000
22 T H -0.6840
23 C H 0.0000
24 T H -1.1278
25 V H 0.0000
26 S H -1.0693
27 G H -1.1081
28 F H -0.2165
29 S H 0.2612
30 L H 0.0000
35 I H 1.3863
36 G H 0.5923
37 Y H 0.8648
38 D H 0.0000
39 L H 0.0000
40 N H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.6868
45 P H -0.7773
46 P H -0.8857
47 G H -1.4515
48 K H -2.3198
49 G H -1.5215
50 L H 0.0000
51 E H -0.8968
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 I H 0.0000
56 I H 0.0000
57 W H -0.2457
58 G H -0.1360
59 D H -1.4588
63 G H -1.0067
64 T H -0.8376
65 T H -0.5741
66 D H -0.5742
67 Y H -0.5513
68 N H 0.0000
69 S H -0.8999
70 A H -0.6980
71 V H 0.0000
72 K H -1.6082
74 S H -1.0674
75 R H -1.2006
76 V H 0.0000
77 T H -0.9834
78 I H 0.0000
79 S H -0.9282
80 K H -1.4338
81 D H -2.1269
82 T H -1.2036
83 S H -1.6017
84 K H -2.4519
85 N H -1.5723
86 Q H -1.7475
87 F H 0.0000
88 S H -0.8860
89 L H 0.0000
90 K H -1.5817
91 L H 0.0000
92 S H -1.0522
93 S H -0.9681
94 V H 0.0000
95 T H -0.5044
96 A H -0.1860
97 A H 0.0618
98 D H 0.0000
99 T H 0.2221
100 A H 0.0000
101 V H 0.4269
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 G H 0.0000
109 Y H 1.7741
110 W H 1.6866
111 Y H 1.8881
111A A H 1.0506
112A T H 0.6433
112 S H 0.0000
113 Y H 0.9209
114 Y H 0.0000
115 F H 0.0000
116 D H 0.1109
117 Y H 0.1599
118 W H 0.0000
119 G H 0.0000
120 Q H -1.8083
121 G H 0.0000
122 T H -0.0905
123 L H 0.8167
124 V H 0.0000
125 T H 0.2010
126 V H 0.0000
127 S H -0.4425
128 S H -0.5825
1 D L -2.1470
2 I L 0.0000
3 Q L -2.2298
4 M L 0.0000
5 T L -1.3776
6 Q L 0.0000
7 S L -0.6796
8 P L -0.5947
9 S L -0.9762
10 S L -1.2908
11 L L -0.9727
12 S L -1.3768
13 A L 0.0000
14 S L -0.8243
15 V L 0.1967
16 G L -0.7154
17 D L -1.7254
18 R L -2.2898
19 V L 0.0000
20 T L -0.6318
21 I L 0.0000
22 T L -0.7771
23 C L 0.0000
24 R L -2.6820
25 A L 0.0000
26 S L -1.8699
27 Q L -1.8527
28 S L -1.2695
29 I L 0.0000
36 S L -0.7666
37 N L -0.7794
38 N L 0.0000
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.3858
45 K L -1.8707
46 P L -1.2281
47 G L -1.7164
48 K L -2.6274
49 A L -1.5948
50 P L 0.0000
51 K L -1.1987
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2291
56 Y L 0.0384
57 T L 0.0000
65 S L -0.3129
66 R L -0.1458
67 F L 0.4927
68 H L -0.0962
69 S L -0.3171
70 G L -0.4166
71 V L -0.2131
72 P L -0.2585
74 S L -0.3215
75 R L -0.8233
76 F L 0.0000
77 S L -0.3073
78 G L -0.2494
79 S L -0.6710
80 G L -1.0372
83 S L -1.0564
84 G L -1.1585
85 T L -1.6326
86 D L -1.9985
87 F L 0.0000
88 T L -0.6900
89 F L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.4428
93 S L -1.1775
94 L L 0.0000
95 Q L -0.6933
96 P L -1.0835
97 E L -1.7752
98 D L 0.0000
99 I L -0.9852
100 A L 0.0000
101 T L 0.0000
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 E L 0.0000
108 H L -0.5532
109 T L -0.3998
114 L L -0.1766
115 P L 0.0000
116 Y L 0.0000
117 T L -0.8250
118 F L 0.0000
119 G L 0.0000
120 Q L -1.6168
121 G L 0.0000
122 T L 0.0000
123 K L -2.2641
124 L L 0.0000
125 E L -2.1859
126 I L -1.0699
127 K L -1.6776
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Laboratory of Theory of Biopolymers 2018