| Chain sequence(s) |
H: QVQLQESGPGLVKPSETLSLTCTVSGFSLIGYDLNWIRQPPGKGLEWIGIIWGDGTTDYNSAVKSRVTISKDTSKNQFSLKLSSVTAADTAVYYCARGGYWYATSYYFDYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQSISNNLNWYQQKPGKAPKLLIYYTSRFHSGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQEHTLPYTFGQGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:19)
[INFO] Main: Simulation completed successfully. (00:01:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4890 | |
| 2 | V | H | -0.8626 | |
| 3 | Q | H | -1.3741 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.2996 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.6812 | |
| 8 | G | H | -0.5054 | |
| 9 | P | H | -0.1761 | |
| 11 | G | H | 0.1243 | |
| 12 | L | H | 0.5113 | |
| 13 | V | H | 0.0000 | |
| 14 | K | H | -1.4856 | |
| 15 | P | H | -1.1453 | |
| 16 | S | H | -1.1791 | |
| 17 | E | H | -1.5688 | |
| 18 | T | H | -1.2469 | |
| 19 | L | H | 0.0000 | |
| 20 | S | H | -0.9325 | |
| 21 | L | H | 0.0000 | |
| 22 | T | H | -0.6840 | |
| 23 | C | H | 0.0000 | |
| 24 | T | H | -1.1278 | |
| 25 | V | H | 0.0000 | |
| 26 | S | H | -1.0693 | |
| 27 | G | H | -1.1081 | |
| 28 | F | H | -0.2165 | |
| 29 | S | H | 0.2612 | |
| 30 | L | H | 0.0000 | |
| 35 | I | H | 1.3863 | |
| 36 | G | H | 0.5923 | |
| 37 | Y | H | 0.8648 | |
| 38 | D | H | 0.0000 | |
| 39 | L | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | I | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6868 | |
| 45 | P | H | -0.7773 | |
| 46 | P | H | -0.8857 | |
| 47 | G | H | -1.4515 | |
| 48 | K | H | -2.3198 | |
| 49 | G | H | -1.5215 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8968 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | I | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | W | H | -0.2457 | |
| 58 | G | H | -0.1360 | |
| 59 | D | H | -1.4588 | |
| 63 | G | H | -1.0067 | |
| 64 | T | H | -0.8376 | |
| 65 | T | H | -0.5741 | |
| 66 | D | H | -0.5742 | |
| 67 | Y | H | -0.5513 | |
| 68 | N | H | 0.0000 | |
| 69 | S | H | -0.8999 | |
| 70 | A | H | -0.6980 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -1.6082 | |
| 74 | S | H | -1.0674 | |
| 75 | R | H | -1.2006 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.9834 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.9282 | |
| 80 | K | H | -1.4338 | |
| 81 | D | H | -2.1269 | |
| 82 | T | H | -1.2036 | |
| 83 | S | H | -1.6017 | |
| 84 | K | H | -2.4519 | |
| 85 | N | H | -1.5723 | |
| 86 | Q | H | -1.7475 | |
| 87 | F | H | 0.0000 | |
| 88 | S | H | -0.8860 | |
| 89 | L | H | 0.0000 | |
| 90 | K | H | -1.5817 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.0522 | |
| 93 | S | H | -0.9681 | |
| 94 | V | H | 0.0000 | |
| 95 | T | H | -0.5044 | |
| 96 | A | H | -0.1860 | |
| 97 | A | H | 0.0618 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | 0.2221 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.4269 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | G | H | 0.0000 | |
| 108 | G | H | 0.0000 | |
| 109 | Y | H | 1.7741 | |
| 110 | W | H | 1.6866 | |
| 111 | Y | H | 1.8881 | |
| 111A | A | H | 1.0506 | |
| 112A | T | H | 0.6433 | |
| 112 | S | H | 0.0000 | |
| 113 | Y | H | 0.9209 | |
| 114 | Y | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | 0.1109 | |
| 117 | Y | H | 0.1599 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.8083 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | -0.0905 | |
| 123 | L | H | 0.8167 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.2010 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4425 | |
| 128 | S | H | -0.5825 | |
| 1 | D | L | -2.1470 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2298 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.3776 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.6796 | |
| 8 | P | L | -0.5947 | |
| 9 | S | L | -0.9762 | |
| 10 | S | L | -1.2908 | |
| 11 | L | L | -0.9727 | |
| 12 | S | L | -1.3768 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.8243 | |
| 15 | V | L | 0.1967 | |
| 16 | G | L | -0.7154 | |
| 17 | D | L | -1.7254 | |
| 18 | R | L | -2.2898 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6318 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7771 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.6820 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.8699 | |
| 27 | Q | L | -1.8527 | |
| 28 | S | L | -1.2695 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.7666 | |
| 37 | N | L | -0.7794 | |
| 38 | N | L | 0.0000 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -1.3858 | |
| 45 | K | L | -1.8707 | |
| 46 | P | L | -1.2281 | |
| 47 | G | L | -1.7164 | |
| 48 | K | L | -2.6274 | |
| 49 | A | L | -1.5948 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.1987 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.2291 | |
| 56 | Y | L | 0.0384 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.3129 | |
| 66 | R | L | -0.1458 | |
| 67 | F | L | 0.4927 | |
| 68 | H | L | -0.0962 | |
| 69 | S | L | -0.3171 | |
| 70 | G | L | -0.4166 | |
| 71 | V | L | -0.2131 | |
| 72 | P | L | -0.2585 | |
| 74 | S | L | -0.3215 | |
| 75 | R | L | -0.8233 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3073 | |
| 78 | G | L | -0.2494 | |
| 79 | S | L | -0.6710 | |
| 80 | G | L | -1.0372 | |
| 83 | S | L | -1.0564 | |
| 84 | G | L | -1.1585 | |
| 85 | T | L | -1.6326 | |
| 86 | D | L | -1.9985 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.6900 | |
| 89 | F | L | 0.0000 | |
| 90 | T | L | 0.0000 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4428 | |
| 93 | S | L | -1.1775 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.6933 | |
| 96 | P | L | -1.0835 | |
| 97 | E | L | -1.7752 | |
| 98 | D | L | 0.0000 | |
| 99 | I | L | -0.9852 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | 0.0000 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | E | L | 0.0000 | |
| 108 | H | L | -0.5532 | |
| 109 | T | L | -0.3998 | |
| 114 | L | L | -0.1766 | |
| 115 | P | L | 0.0000 | |
| 116 | Y | L | 0.0000 | |
| 117 | T | L | -0.8250 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.6168 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -2.2641 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -2.1859 | |
| 126 | I | L | -1.0699 | |
| 127 | K | L | -1.6776 |