| Chain sequence(s) |
A: EVQLVESGGGLVQPGGSLRLSCAASGRTFSSYVMGWLRQAPGKEREFVAAINWGGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRPEDTAVYYCNAVSIGAGNDYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VP33A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.947123 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:08)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:08)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:09)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:09)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:09)
[INFO] FoldX: Building mutant model (00:00:45)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:50)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:18)
[INFO] Main: Simulation completed successfully. (00:01:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -2.5096 | |
| 2 | V | A | -1.7544 | |
| 3 | Q | A | -1.6340 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.9385 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.1964 | |
| 8 | G | A | -0.6372 | |
| 9 | G | A | 0.1009 | |
| 10 | G | A | 0.6664 | |
| 11 | L | A | 1.3144 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.5382 | |
| 14 | P | A | -1.8585 | |
| 15 | G | A | -1.5712 | |
| 16 | G | A | -1.0281 | |
| 17 | S | A | -1.3187 | |
| 18 | L | A | -0.9268 | |
| 19 | R | A | -2.1179 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3728 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0965 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.6825 | |
| 26 | G | A | -2.3037 | |
| 27 | R | A | -2.6171 | |
| 28 | T | A | -1.4419 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -0.9726 | |
| 31 | S | A | 0.2130 | |
| 32 | Y | A | 0.3581 | |
| 33 | P | A | 0.3442 | mutated: VP33A |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | L | A | -0.3943 | |
| 38 | R | A | -1.2143 | |
| 39 | Q | A | -2.0233 | |
| 40 | A | A | -1.8987 | |
| 41 | P | A | -1.4701 | |
| 42 | G | A | -1.9907 | |
| 43 | K | A | -3.5291 | |
| 44 | E | A | -3.8429 | |
| 45 | R | A | -3.3000 | |
| 46 | E | A | -2.7607 | |
| 47 | F | A | -0.6311 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.4795 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | -0.1268 | |
| 53 | W | A | 0.3610 | |
| 54 | G | A | -0.7860 | |
| 55 | G | A | -1.0967 | |
| 56 | G | A | -0.7901 | |
| 57 | S | A | -0.3064 | |
| 58 | T | A | 0.2207 | |
| 59 | Y | A | 0.6080 | |
| 60 | Y | A | -0.3111 | |
| 61 | A | A | -1.1894 | |
| 62 | D | A | -2.3292 | |
| 63 | S | A | -1.7121 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5401 | |
| 66 | G | A | -1.8228 | |
| 67 | R | A | -1.6291 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7716 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.5658 | |
| 72 | R | A | -1.2449 | |
| 73 | D | A | -1.8620 | |
| 74 | N | A | -2.4650 | |
| 75 | S | A | -1.9255 | |
| 76 | K | A | -2.4924 | |
| 77 | N | A | -2.1616 | |
| 78 | T | A | 0.0000 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.5387 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2722 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.5086 | |
| 85 | S | A | -1.4186 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -3.0223 | |
| 88 | P | A | -2.2406 | |
| 89 | E | A | -2.5454 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.6172 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.4664 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0766 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | -0.1025 | |
| 98 | A | A | 0.0000 | |
| 99 | V | A | 0.1970 | |
| 100 | S | A | 0.4942 | |
| 101 | I | A | 1.5887 | |
| 102 | G | A | 0.3342 | |
| 103 | A | A | -0.2578 | |
| 104 | G | A | -0.8234 | |
| 105 | N | A | -1.3102 | |
| 106 | D | A | -1.5885 | |
| 107 | Y | A | -0.7541 | |
| 108 | W | A | -0.0068 | |
| 109 | G | A | -0.0631 | |
| 110 | Q | A | -0.8455 | |
| 111 | G | A | 0.0000 | |
| 112 | T | A | 0.5821 | |
| 113 | L | A | 1.6590 | |
| 114 | V | A | 0.0000 | |
| 115 | T | A | 0.2047 | |
| 116 | V | A | 0.0000 | |
| 117 | S | A | -0.8955 | |
| 118 | S | A | -0.5204 |