| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAASGRSVRTWSMGWFRQPPGKERELVAGISWSGSGTYHADSVKGRFTISRDNAKNMVYLQMNSLKPEDTAVYYCAAGQTGWNPGSDFHRWGKGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:17)
[INFO] Main: Simulation completed successfully. (00:01:18)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -2.0824 | |
| 2 | V | A | -1.9365 | |
| 3 | Q | A | -2.3056 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.2072 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0876 | |
| 8 | G | A | -1.0052 | |
| 9 | G | A | -0.7803 | |
| 10 | G | A | -0.0578 | |
| 11 | L | A | 1.0594 | |
| 12 | V | A | 0.0380 | |
| 13 | Q | A | -1.2274 | |
| 14 | A | A | -1.5063 | |
| 15 | G | A | -1.4541 | |
| 16 | G | A | -1.0345 | |
| 17 | S | A | -1.5037 | |
| 18 | L | A | -1.1170 | |
| 19 | R | A | -2.3243 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.7318 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.7832 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.4849 | |
| 26 | G | A | -1.9975 | |
| 27 | R | A | -2.7342 | |
| 28 | S | A | -2.0586 | |
| 29 | V | A | 0.0000 | |
| 30 | R | A | -2.0811 | |
| 31 | T | A | -1.1456 | |
| 32 | W | A | -0.8551 | |
| 33 | S | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -0.2952 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.9138 | |
| 40 | P | A | 0.0000 | |
| 41 | P | A | -1.3833 | |
| 42 | G | A | -1.9602 | |
| 43 | K | A | -3.3067 | |
| 44 | E | A | -3.4998 | |
| 45 | R | A | -2.5801 | |
| 46 | E | A | -1.7379 | |
| 47 | L | A | -0.4121 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | 0.0060 | |
| 53 | W | A | 0.1425 | |
| 54 | S | A | -0.2205 | |
| 55 | G | A | -0.4290 | |
| 56 | S | A | -0.2071 | |
| 57 | G | A | -0.0130 | |
| 58 | T | A | 0.0916 | |
| 59 | Y | A | -0.2535 | |
| 60 | H | A | -1.1518 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.5585 | |
| 63 | S | A | -1.8692 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.7518 | |
| 66 | G | A | -1.9641 | |
| 67 | R | A | -1.8588 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.1213 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4363 | |
| 72 | R | A | -0.8690 | |
| 73 | D | A | -1.4914 | |
| 74 | N | A | -1.7164 | |
| 75 | A | A | -1.4428 | |
| 76 | K | A | -2.0400 | |
| 77 | N | A | -1.7664 | |
| 78 | M | A | -1.0985 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.5985 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6751 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -2.1133 | |
| 85 | S | A | -1.4928 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.4409 | |
| 88 | P | A | -1.8545 | |
| 89 | E | A | -2.3100 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.8665 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.4198 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.4897 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | G | A | 0.0000 | |
| 100 | Q | A | -1.6643 | |
| 101 | T | A | -1.1747 | |
| 102 | G | A | -0.8243 | |
| 103 | W | A | -0.7666 | |
| 104 | N | A | -1.6211 | |
| 105 | P | A | -1.3353 | |
| 106 | G | A | -1.4420 | |
| 107 | S | A | -1.8922 | |
| 108 | D | A | -2.7672 | |
| 109 | F | A | -1.7546 | |
| 110 | H | A | -2.0903 | |
| 111 | R | A | -2.1968 | |
| 112 | W | A | -1.0380 | |
| 113 | G | A | -1.3180 | |
| 114 | K | A | -1.8347 | |
| 115 | G | A | -1.0806 | |
| 116 | T | A | -1.0584 | |
| 117 | Q | A | -0.9652 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.2243 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -0.6847 | |
| 122 | S | A | -0.8018 |