Project name: query_structure

Status: done

Started: 2026-03-17 00:20:16
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Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCAASGRSVRTWSMGWFRQPPGKERELVAGISWSGSGTYHADSVKGRFTISRDNAKNMVYLQMNSLKPEDTAVYYCAAGQTGWNPGSDFHRWGKGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:18)
Show buried residues

Minimal score value
-3.4998
Maximal score value
1.0594
Average score
-0.9697
Total score value
-118.3091

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.0824
2 V A -1.9365
3 Q A -2.3056
4 L A 0.0000
5 Q A -1.2072
6 E A 0.0000
7 S A -1.0876
8 G A -1.0052
9 G A -0.7803
10 G A -0.0578
11 L A 1.0594
12 V A 0.0380
13 Q A -1.2274
14 A A -1.5063
15 G A -1.4541
16 G A -1.0345
17 S A -1.5037
18 L A -1.1170
19 R A -2.3243
20 L A 0.0000
21 S A -0.7318
22 C A 0.0000
23 A A -0.7832
24 A A 0.0000
25 S A -1.4849
26 G A -1.9975
27 R A -2.7342
28 S A -2.0586
29 V A 0.0000
30 R A -2.0811
31 T A -1.1456
32 W A -0.8551
33 S A 0.0000
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A -0.2952
38 R A 0.0000
39 Q A -1.9138
40 P A 0.0000
41 P A -1.3833
42 G A -1.9602
43 K A -3.3067
44 E A -3.4998
45 R A -2.5801
46 E A -1.7379
47 L A -0.4121
48 V A 0.0000
49 A A 0.0000
50 G A 0.0000
51 I A 0.0000
52 S A 0.0060
53 W A 0.1425
54 S A -0.2205
55 G A -0.4290
56 S A -0.2071
57 G A -0.0130
58 T A 0.0916
59 Y A -0.2535
60 H A -1.1518
61 A A 0.0000
62 D A -2.5585
63 S A -1.8692
64 V A 0.0000
65 K A -2.7518
66 G A -1.9641
67 R A -1.8588
68 F A 0.0000
69 T A -1.1213
70 I A 0.0000
71 S A -0.4363
72 R A -0.8690
73 D A -1.4914
74 N A -1.7164
75 A A -1.4428
76 K A -2.0400
77 N A -1.7664
78 M A -1.0985
79 V A 0.0000
80 Y A -0.5985
81 L A 0.0000
82 Q A -1.6751
83 M A 0.0000
84 N A -2.1133
85 S A -1.4928
86 L A 0.0000
87 K A -2.4409
88 P A -1.8545
89 E A -2.3100
90 D A 0.0000
91 T A -0.8665
92 A A 0.0000
93 V A -0.4198
94 Y A 0.0000
95 Y A -0.4897
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 G A 0.0000
100 Q A -1.6643
101 T A -1.1747
102 G A -0.8243
103 W A -0.7666
104 N A -1.6211
105 P A -1.3353
106 G A -1.4420
107 S A -1.8922
108 D A -2.7672
109 F A -1.7546
110 H A -2.0903
111 R A -2.1968
112 W A -1.0380
113 G A -1.3180
114 K A -1.8347
115 G A -1.0806
116 T A -1.0584
117 Q A -0.9652
118 V A 0.0000
119 T A -0.2243
120 V A 0.0000
121 S A -0.6847
122 S A -0.8018
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Laboratory of Theory of Biopolymers 2018