Project name: phc

Status: done

Started: 2026-07-04 09:07:01
Settings
Chain sequence(s) A: EVQLVESGGGLVQPGGSLRLSCAVSGDSISSYSWNWIRQAPGKCLEWVASIRYSSSYTNYNPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARDRLVSSITIGSGPAWFDYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-2.6154
Maximal score value
2.698
Average score
-0.3513
Total score value
-44.6197

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -2.3289
2 V A -1.5421
3 Q A -1.6321
4 L A 0.0000
5 V A 0.0214
6 E A 0.0000
7 S A -0.5417
8 G A -1.0389
9 G A -0.0328
10 G A 0.6279
11 L A 1.3951
12 V A -0.0438
13 Q A -1.2544
14 P A -1.4684
15 G A -1.3525
16 G A -1.0928
17 S A -1.3969
18 L A -1.2742
19 R A -2.3938
20 L A 0.0000
21 S A -0.6240
22 C A 0.0000
23 A A -0.4022
24 V A 0.0000
25 S A -1.1627
26 G A -1.7744
27 D A -1.5131
28 S A -1.0364
29 I A 0.0000
30 S A -0.4747
31 S A 0.5227
32 Y A 0.4270
33 S A 0.0000
34 W A 0.0000
35 N A 0.0000
36 W A 0.0000
37 I A 0.0000
38 R A 0.1504
39 Q A -0.0976
40 A A -0.7403
41 P A -0.8825
42 G A -1.1999
43 K A -1.5412
44 C A 0.1400
45 L A 0.8756
46 E A 0.0752
47 W A 0.1560
48 V A 0.0000
49 A A 0.0000
50 S A 0.0000
51 I A 0.0000
52 R A 0.0000
53 Y A 0.6986
54 S A 0.9644
55 S A 0.2717
56 S A 0.0376
57 Y A 0.5474
58 T A 0.0404
59 N A -0.4953
60 Y A -0.7287
61 N A -0.8728
62 P A -1.1920
63 S A -0.9637
64 V A 0.0000
65 K A -2.2322
66 G A -1.6410
67 R A -1.5497
68 I A 0.0000
69 T A -1.0149
70 I A 0.0000
71 S A -0.5846
72 R A -1.2320
73 D A -2.0478
74 D A -2.5356
75 S A -2.0445
76 K A -2.6154
77 N A -2.0897
78 T A 0.0000
79 F A 0.0000
80 Y A -0.6971
81 L A 0.0000
82 Q A -1.7754
83 M A 0.0000
84 N A -1.6022
85 S A -1.2687
86 L A 0.0000
87 R A -2.1802
88 A A -1.6754
89 E A -2.2192
90 D A 0.0000
91 T A -0.3908
92 A A 0.0000
93 V A 0.8026
94 Y A 0.0000
95 Y A 0.3899
96 C A 0.0000
97 A A 0.0000
98 R A 0.0000
99 D A 0.0000
100 R A -1.0562
101 L A 0.7788
102 V A 1.3324
103 S A 0.0000
104 S A 1.5289
105 I A 2.6980
106 T A 2.2344
107 I A 2.5031
108 G A 0.7742
109 S A 0.0284
110 G A -0.2418
111 P A -0.0254
112 A A 0.1556
113 W A 0.8031
114 F A 0.2154
115 D A -0.4187
116 Y A 0.0771
117 W A 0.2925
118 G A -0.2849
119 Q A -1.0072
120 G A -0.0647
121 T A 0.4632
122 L A 1.6556
123 V A 0.0000
124 T A 0.4053
125 V A 0.0000
126 S A -0.6779
127 S A -0.4416
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018