| Chain sequence(s) |
A: KGHKGHG
C: KGHKGHG B: KGHKGHG E: KGHKGHG D: KGHKGHG G: KGHKGHG F: KGHKGHG I: KGHKGHG H: KGHKGHG K: KGHKGHG J: KGHKGHG L: KGHKGHG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:44)
[INFO] Main: Simulation completed successfully. (00:03:47)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -3.8163 | |
| 2 | G | A | 0.0000 | |
| 3 | H | A | -3.8422 | |
| 4 | K | A | -3.9007 | |
| 5 | G | A | -2.8311 | |
| 6 | H | A | -2.9945 | |
| 7 | G | A | -2.8946 | |
| 1 | K | B | -2.9485 | |
| 2 | G | B | -3.3453 | |
| 3 | H | B | -3.5573 | |
| 4 | K | B | -4.0618 | |
| 5 | G | B | -3.3923 | |
| 6 | H | B | -3.6836 | |
| 7 | G | B | -3.2743 | |
| 1 | K | C | -2.8600 | |
| 2 | G | C | -2.6443 | |
| 3 | H | C | -3.2743 | |
| 4 | K | C | -4.0485 | |
| 5 | G | C | -3.4498 | |
| 6 | H | C | -4.1864 | |
| 7 | G | C | -3.4540 | |
| 1 | K | D | -2.9107 | |
| 2 | G | D | -2.9348 | |
| 3 | H | D | -3.2712 | |
| 4 | K | D | -3.7449 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -3.3778 | |
| 7 | G | D | -3.6723 | |
| 1 | K | E | -2.7123 | |
| 2 | G | E | -3.0558 | |
| 3 | H | E | -3.9938 | |
| 4 | K | E | -4.2739 | |
| 5 | G | E | -3.3465 | |
| 6 | H | E | -3.2376 | |
| 7 | G | E | -2.4755 | |
| 1 | K | F | -2.9300 | |
| 2 | G | F | -3.4107 | |
| 3 | H | F | -3.7140 | |
| 4 | K | F | -3.7750 | |
| 5 | G | F | -3.0961 | |
| 6 | H | F | -2.3088 | |
| 7 | G | F | -2.2368 | |
| 1 | K | G | -3.7302 | |
| 2 | G | G | 0.0000 | |
| 3 | H | G | -3.1620 | |
| 4 | K | G | -3.3744 | |
| 5 | G | G | -2.7186 | |
| 6 | H | G | -2.8311 | |
| 7 | G | G | -2.7530 | |
| 1 | K | H | -3.3631 | |
| 2 | G | H | -3.1393 | |
| 3 | H | H | 0.0000 | |
| 4 | K | H | -3.2251 | |
| 5 | G | H | 0.0000 | |
| 6 | H | H | -2.2332 | |
| 7 | G | H | -1.8166 | |
| 1 | K | I | -3.7682 | |
| 2 | G | I | -3.1245 | |
| 3 | H | I | -2.9468 | |
| 4 | K | I | -3.3156 | |
| 5 | G | I | -2.6380 | |
| 6 | H | I | -2.7355 | |
| 7 | G | I | -3.1003 | |
| 1 | K | J | -2.7478 | |
| 2 | G | J | -2.5940 | |
| 3 | H | J | -3.6530 | |
| 4 | K | J | -3.8324 | |
| 5 | G | J | -3.4837 | |
| 6 | H | J | -3.6356 | |
| 7 | G | J | 0.0000 | |
| 1 | K | K | -2.8487 | |
| 2 | G | K | -2.9760 | |
| 3 | H | K | -3.6110 | |
| 4 | K | K | -3.9831 | |
| 5 | G | K | 0.0000 | |
| 6 | H | K | -2.7978 | |
| 7 | G | K | -2.5743 | |
| 1 | K | L | -3.2924 | |
| 2 | G | L | -3.4143 | |
| 3 | H | L | -3.7658 | |
| 4 | K | L | -3.3108 | |
| 5 | G | L | -2.7388 | |
| 6 | H | L | -3.0363 | |
| 7 | G | L | -3.2855 |