Project name: query_structure

Status: done

Started: 2026-03-17 00:48:32
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYTRWMRWYRQAPGKEREWVAAIESSGNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDSGFNWFWYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:27)
Show buried residues

Minimal score value
-3.5885
Maximal score value
2.7016
Average score
-0.5857
Total score value
-69.696

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5531
2 V A -1.0682
3 Q A -1.0431
4 L A 0.0000
5 V A 1.1680
6 E A 0.0000
7 S A -0.4299
8 G A -1.0525
9 G A -0.8032
10 G A -0.0734
11 L A 1.0141
12 V A 0.0036
13 Q A -1.2197
14 A A -1.3802
15 G A -1.3080
16 G A -0.8554
17 S A -1.1933
18 L A -0.9171
19 R A -2.1373
20 L A 0.0000
21 S A -0.3610
22 C A 0.0000
23 A A -0.0768
24 A A 0.0000
25 S A -0.7942
26 G A -1.1841
27 F A 0.0000
28 P A -0.2916
29 V A 0.0000
30 Y A 0.4034
31 T A -0.5092
32 R A -1.7726
33 W A -0.9179
34 M A 0.0000
35 R A -0.0154
36 W A 0.0000
37 Y A -0.4377
38 R A -1.2248
39 Q A -2.1454
40 A A -2.0594
41 P A -1.4487
42 G A -1.9903
43 K A -3.3995
44 E A -3.5885
45 R A -2.7682
46 E A -1.8043
47 W A -0.6134
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 E A -1.0815
53 S A -0.9094
54 S A -0.8844
55 G A -1.1662
56 N A -1.0399
57 T A -0.2661
58 Y A 0.0753
59 Y A -0.5071
60 A A -1.1599
61 D A -2.3293
62 S A -1.7087
63 V A 0.0000
64 K A -2.5072
65 G A -1.7643
66 R A -1.4360
67 F A 0.0000
68 T A -0.7597
69 I A 0.0000
70 S A -0.6407
71 R A -0.9525
72 D A -1.4655
73 N A -1.3839
74 A A -1.2771
75 K A -2.2460
76 N A -1.3956
77 T A 0.0000
78 V A 0.0000
79 Y A -0.6573
80 L A 0.0000
81 Q A -1.2201
82 M A 0.0000
83 N A -1.3976
84 S A -1.1897
85 L A 0.0000
86 K A -2.2421
87 P A -1.9121
88 E A -2.3312
89 D A 0.0000
90 T A -0.9478
91 A A 0.0000
92 V A -0.4790
93 Y A 0.0000
94 Y A -0.1504
95 C A 0.0000
96 N A 0.0000
97 V A 0.0000
98 K A -0.4505
99 D A 0.1535
100 S A 0.6732
101 G A 1.4399
102 F A 1.8887
103 N A 0.7781
104 W A 2.0719
105 F A 2.7016
106 W A 1.8390
107 Y A 1.5350
108 D A 0.2279
109 Y A 0.1317
110 W A 0.2322
111 G A -0.0756
112 Q A -0.8876
113 G A 0.0000
114 T A -0.6432
115 Q A -1.1197
116 V A 0.0000
117 T A -0.2695
118 V A 0.0000
119 S A -0.7413
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Laboratory of Theory of Biopolymers 2018