| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYTRWMRWYRQAPGKEREWVAAIESSGNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDSGFNWFWYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:26)
[INFO] Main: Simulation completed successfully. (00:01:27)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5531 | |
| 2 | V | A | -1.0682 | |
| 3 | Q | A | -1.0431 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1680 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.4299 | |
| 8 | G | A | -1.0525 | |
| 9 | G | A | -0.8032 | |
| 10 | G | A | -0.0734 | |
| 11 | L | A | 1.0141 | |
| 12 | V | A | 0.0036 | |
| 13 | Q | A | -1.2197 | |
| 14 | A | A | -1.3802 | |
| 15 | G | A | -1.3080 | |
| 16 | G | A | -0.8554 | |
| 17 | S | A | -1.1933 | |
| 18 | L | A | -0.9171 | |
| 19 | R | A | -2.1373 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3610 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0768 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7942 | |
| 26 | G | A | -1.1841 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -0.2916 | |
| 29 | V | A | 0.0000 | |
| 30 | Y | A | 0.4034 | |
| 31 | T | A | -0.5092 | |
| 32 | R | A | -1.7726 | |
| 33 | W | A | -0.9179 | |
| 34 | M | A | 0.0000 | |
| 35 | R | A | -0.0154 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.4377 | |
| 38 | R | A | -1.2248 | |
| 39 | Q | A | -2.1454 | |
| 40 | A | A | -2.0594 | |
| 41 | P | A | -1.4487 | |
| 42 | G | A | -1.9903 | |
| 43 | K | A | -3.3995 | |
| 44 | E | A | -3.5885 | |
| 45 | R | A | -2.7682 | |
| 46 | E | A | -1.8043 | |
| 47 | W | A | -0.6134 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | E | A | -1.0815 | |
| 53 | S | A | -0.9094 | |
| 54 | S | A | -0.8844 | |
| 55 | G | A | -1.1662 | |
| 56 | N | A | -1.0399 | |
| 57 | T | A | -0.2661 | |
| 58 | Y | A | 0.0753 | |
| 59 | Y | A | -0.5071 | |
| 60 | A | A | -1.1599 | |
| 61 | D | A | -2.3293 | |
| 62 | S | A | -1.7087 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.5072 | |
| 65 | G | A | -1.7643 | |
| 66 | R | A | -1.4360 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7597 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6407 | |
| 71 | R | A | -0.9525 | |
| 72 | D | A | -1.4655 | |
| 73 | N | A | -1.3839 | |
| 74 | A | A | -1.2771 | |
| 75 | K | A | -2.2460 | |
| 76 | N | A | -1.3956 | |
| 77 | T | A | 0.0000 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6573 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2201 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.3976 | |
| 84 | S | A | -1.1897 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.2421 | |
| 87 | P | A | -1.9121 | |
| 88 | E | A | -2.3312 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.9478 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.4790 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.1504 | |
| 95 | C | A | 0.0000 | |
| 96 | N | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | K | A | -0.4505 | |
| 99 | D | A | 0.1535 | |
| 100 | S | A | 0.6732 | |
| 101 | G | A | 1.4399 | |
| 102 | F | A | 1.8887 | |
| 103 | N | A | 0.7781 | |
| 104 | W | A | 2.0719 | |
| 105 | F | A | 2.7016 | |
| 106 | W | A | 1.8390 | |
| 107 | Y | A | 1.5350 | |
| 108 | D | A | 0.2279 | |
| 109 | Y | A | 0.1317 | |
| 110 | W | A | 0.2322 | |
| 111 | G | A | -0.0756 | |
| 112 | Q | A | -0.8876 | |
| 113 | G | A | 0.0000 | |
| 114 | T | A | -0.6432 | |
| 115 | Q | A | -1.1197 | |
| 116 | V | A | 0.0000 | |
| 117 | T | A | -0.2695 | |
| 118 | V | A | 0.0000 | |
| 119 | S | A | -0.7413 |