Project name: C7Y SOD1 [mutate: CY7A]

Status: done

Started: 2026-02-14 06:56:52
Settings
Chain sequence(s) A: MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues CY7A
Energy difference between WT (input) and mutated protein (by FoldX) 35.9442 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:04:30)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:04:41)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:12)
Show buried residues

Minimal score value
-3.8943
Maximal score value
1.7978
Average score
-0.9175
Total score value
-141.2888

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.2740
2 A A -1.1576
3 T A -0.8614
4 K A -0.6756
5 A A 0.0000
6 V A 1.1306
7 Y A 0.0000 mutated: CY7A
8 V A 0.8699
9 L A 0.0000
10 K A -2.1575
11 G A -2.2609
12 D A -2.5651
13 G A -1.7554
14 P A -1.7010
15 V A 0.0000
16 Q A -2.2628
17 G A 0.0000
18 I A 0.9745
19 I A 0.0000
20 N A 0.1434
21 F A 0.0000
22 E A -2.0954
23 Q A 0.0000
24 K A -2.9678
25 E A -3.0646
26 S A -2.0690
27 N A -2.2692
28 G A -2.0205
29 P A -1.8170
30 V A 0.0000
31 K A -2.2553
32 V A 0.0000
33 W A -0.5750
34 G A -0.1279
35 S A -0.9943
36 I A 0.0000
37 K A -2.7285
38 G A -1.9135
39 L A 0.0000
40 T A -2.2353
41 E A -3.1657
42 G A -1.3594
43 L A -0.2396
44 H A 0.0000
45 G A 0.0000
46 F A 0.0000
47 H A 0.0000
48 V A 0.0000
49 H A 0.0000
50 E A -0.2198
51 F A 0.6164
52 G A -0.1162
53 D A -0.7798
54 N A -0.8313
55 T A -0.6889
56 A A -0.4611
57 G A -1.2352
58 C A -0.7986
59 T A -0.4110
60 S A -0.4470
61 A A 0.0000
62 G A -0.1960
63 P A -0.5015
64 H A 0.0000
65 F A 0.0000
66 N A -0.8683
67 P A -0.6473
68 L A -0.5729
69 S A -1.0803
70 R A -2.6641
71 K A -3.1724
72 H A 0.0000
73 G A 0.0000
74 G A 0.0000
75 P A -1.7280
76 K A -2.7339
77 D A -3.0876
78 E A -3.6299
79 E A -3.5891
80 R A 0.0000
81 H A 0.0000
82 V A 0.0000
83 G A 0.0000
84 D A 0.0000
85 L A 0.0000
86 G A 0.0000
87 N A -0.1471
88 V A 0.0000
89 T A -0.8132
90 A A 0.0000
91 D A -3.8454
92 K A -3.8943
93 D A -3.7038
94 G A 0.0000
95 V A -2.8845
96 A A 0.0000
97 D A -2.2170
98 V A 0.0000
99 S A -1.0030
100 I A -1.1200
101 E A -2.1882
102 D A 0.0000
103 S A -0.9799
104 V A -0.4468
105 I A 0.0000
106 S A -0.9742
107 L A 0.0000
108 S A -0.9988
109 G A -1.5021
110 D A -2.0339
111 H A -0.9584
112 C A -0.6166
113 I A 0.0000
114 I A 0.7768
115 G A 0.2819
116 R A 0.0335
117 T A 0.0000
118 L A 0.0000
119 V A 0.0000
120 V A 0.0000
121 H A 0.0000
122 E A -1.8794
123 K A -1.8149
124 A A -0.6925
125 D A 0.0000
126 D A -1.2072
127 L A -1.1517
128 G A -2.5692
129 K A -2.3025
130 G A -2.3693
131 G A -2.2597
132 N A -2.9882
133 E A -3.4081
134 E A -3.2099
135 S A 0.0000
136 T A -3.2974
137 K A -3.2418
138 T A -1.8372
139 G A 0.0000
140 N A -2.0724
141 A A 0.0000
142 G A -1.3494
143 S A -1.2146
144 R A -1.2564
145 L A -1.4353
146 A A 0.0000
147 C A 0.0000
148 G A 0.0000
149 V A 0.9378
150 I A 0.0000
151 G A 1.1474
152 I A 1.7978
153 A A 0.1927
154 Q A -0.8257
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018