Project name: query_structure

Status: done

Started: 2026-03-17 01:06:17
Settings
Chain sequence(s) A: VCGETCVGGTCNTPGCTCSWPVCT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:09)
Show buried residues

Minimal score value
-1.3839
Maximal score value
2.2197
Average score
0.4876
Total score value
11.7015

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.8481
2 C A 0.7080
3 G A 0.3694
4 E A 0.3158
5 T A 0.8866
6 C A 0.0000
7 V A 1.9013
8 G A 0.2891
9 G A 0.2959
10 T A 0.0196
11 C A -0.2072
12 N A -1.3839
13 T A -0.9382
14 P A -0.7759
15 G A -0.7032
16 C A 0.0008
17 T A 0.1579
18 C A 1.1182
19 S A 1.0837
20 W A 1.9392
21 P A 1.6783
22 V A 2.2197
23 C A 0.0000
24 T A 0.8783
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Laboratory of Theory of Biopolymers 2018