| Chain sequence(s) |
A: FFKGHFG
C: FFKGHFG B: FFKGHFG E: FFKGHFG D: FFKGHFG G: FFKGHFG F: FFKGHFG I: FFKGHFG H: FFKGHFG K: FFKGHFG J: FFKGHFG M: FFKGHFG L: FFKGHFG O: FFKGHFG N: FFKGHFG Q: FFKGHFG P: FFKGHFG S: FFKGHFG R: FFKGHFG T: FFKGHFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:25:23)
[INFO] Main: Simulation completed successfully. (00:25:28)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 0.0000 | |
| 2 | F | A | 0.5992 | |
| 3 | K | A | 0.1008 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | 0.4985 | |
| 6 | F | A | 1.5348 | |
| 7 | G | A | 0.3974 | |
| 1 | F | B | 1.0377 | |
| 2 | F | B | 0.0000 | |
| 3 | K | B | -0.2397 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | 0.0662 | |
| 6 | F | B | 0.9614 | |
| 7 | G | B | 0.0474 | |
| 1 | F | C | 1.2231 | |
| 2 | F | C | 0.6698 | |
| 3 | K | C | -0.2862 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -0.2918 | |
| 6 | F | C | 0.4049 | |
| 7 | G | C | -0.1066 | |
| 1 | F | D | 0.0000 | |
| 2 | F | D | 1.0081 | |
| 3 | K | D | 0.0000 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | 0.1399 | |
| 6 | F | D | 1.3493 | |
| 7 | G | D | 0.1670 | |
| 1 | F | E | 1.1994 | |
| 2 | F | E | 1.6519 | |
| 3 | K | E | 0.5449 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | 0.3249 | |
| 6 | F | E | 0.7616 | |
| 7 | G | E | -0.0942 | |
| 1 | F | F | 0.0000 | |
| 2 | F | F | 1.7126 | |
| 3 | K | F | 1.0167 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | 0.7164 | |
| 6 | F | F | 1.2471 | |
| 7 | G | F | 0.0546 | |
| 1 | F | G | 1.4028 | |
| 2 | F | G | 0.0000 | |
| 3 | K | G | 0.8706 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | 0.3158 | |
| 6 | F | G | 1.2084 | |
| 7 | G | G | 0.1446 | |
| 1 | F | H | 1.0892 | |
| 2 | F | H | 1.0921 | |
| 3 | K | H | 0.0415 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -0.1182 | |
| 6 | F | H | 0.5901 | |
| 7 | G | H | 0.0510 | |
| 1 | F | I | 0.9120 | |
| 2 | F | I | 0.0000 | |
| 3 | K | I | -0.4804 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -0.5910 | |
| 6 | F | I | 0.8044 | |
| 7 | G | I | 0.1056 | |
| 1 | F | J | 1.0019 | |
| 2 | F | J | 0.8415 | |
| 3 | K | J | -0.2529 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -0.1896 | |
| 6 | F | J | 0.2733 | |
| 7 | G | J | -0.0959 | |
| 1 | F | K | 1.2115 | |
| 2 | F | K | 1.0681 | |
| 3 | K | K | 0.0000 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -0.4497 | |
| 6 | F | K | 0.4425 | |
| 7 | G | K | -0.0098 | |
| 1 | F | L | 0.0000 | |
| 2 | F | L | 1.1251 | |
| 3 | K | L | 0.1073 | |
| 4 | G | L | 0.0960 | |
| 5 | H | L | 0.2788 | |
| 6 | F | L | 1.4193 | |
| 7 | G | L | 0.4241 | |
| 1 | F | M | 2.2102 | |
| 2 | F | M | 1.2041 | |
| 3 | K | M | 0.0357 | |
| 4 | G | M | 0.0000 | |
| 5 | H | M | 0.1844 | |
| 6 | F | M | 1.2073 | |
| 7 | G | M | 0.3723 | |
| 1 | F | N | 0.0000 | |
| 2 | F | N | 0.8356 | |
| 3 | K | N | -0.1721 | |
| 4 | G | N | 0.0000 | |
| 5 | H | N | 0.2243 | |
| 6 | F | N | 1.2935 | |
| 7 | G | N | 0.3118 | |
| 1 | F | O | 0.9374 | |
| 2 | F | O | 0.0000 | |
| 3 | K | O | -0.9123 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -0.3857 | |
| 6 | F | O | 0.6691 | |
| 7 | G | O | 0.0171 | |
| 1 | F | P | 0.6198 | |
| 2 | F | P | 0.3798 | |
| 3 | K | P | -0.8255 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | -0.6613 | |
| 6 | F | P | 0.9249 | |
| 7 | G | P | 0.1809 | |
| 1 | F | Q | 0.4670 | |
| 2 | F | Q | 0.2867 | |
| 3 | K | Q | -0.8170 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -0.3991 | |
| 6 | F | Q | 0.9418 | |
| 7 | G | Q | 0.0349 | |
| 1 | F | R | -0.0093 | |
| 2 | F | R | 0.5616 | |
| 3 | K | R | -0.0090 | |
| 4 | G | R | 0.0000 | |
| 5 | H | R | -0.0241 | |
| 6 | F | R | 1.5041 | |
| 7 | G | R | 0.3897 | |
| 1 | F | S | 0.0000 | |
| 2 | F | S | 0.9517 | |
| 3 | K | S | -0.1229 | |
| 4 | G | S | 0.0000 | |
| 5 | H | S | -0.0875 | |
| 6 | F | S | 1.2244 | |
| 7 | G | S | 0.1502 | |
| 1 | F | T | 0.2854 | |
| 2 | F | T | 0.0000 | |
| 3 | K | T | -0.4995 | |
| 4 | G | T | 0.0000 | |
| 5 | H | T | -0.0947 | |
| 6 | F | T | 0.8451 | |
| 7 | G | T | 0.1255 |