Project name: query_structure

Status: done

Started: 2026-03-17 01:15:23
Settings
Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAWSYDEVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVRDEETGEFHWPPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:05)
Show buried residues

Minimal score value
-4.1454
Maximal score value
1.5278
Average score
-1.025
Total score value
-97.3775

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.3237
2 S A -0.2810
3 D A -1.4962
4 V A -1.0117
5 P A 0.0000
6 R A -2.3420
7 D A -2.9199
8 L A 0.0000
9 E A -2.0094
10 V A 0.0789
11 V A 1.5278
12 A A 0.8843
13 A A 0.2937
14 T A -0.3433
15 P A -1.1204
16 T A -0.9948
17 S A -0.5376
18 L A 0.0000
19 L A 0.7233
20 I A 0.0000
21 S A -0.9793
22 W A 0.0000
23 D A -2.4263
24 A A -1.0772
25 W A -0.6677
26 S A -0.7096
27 Y A -1.2040
28 D A -2.7568
29 E A -3.2839
30 V A -2.3932
31 R A -3.3124
32 Y A -1.7051
33 Y A 0.0000
34 R A -0.7496
35 I A 0.0000
36 T A 0.0000
37 Y A -0.4564
38 G A -0.7705
39 E A -1.6524
40 T A -1.2925
41 G A -1.2495
42 G A -1.4272
43 N A -1.5682
44 S A -0.9400
45 P A -0.4607
46 V A 0.1901
47 Q A -1.1696
48 E A -1.7722
49 F A -0.7197
50 T A -0.4870
51 V A 0.0000
52 P A -1.2252
53 G A -2.0129
54 S A -1.6024
55 K A -2.0370
56 S A -1.2902
57 T A -0.7212
58 A A 0.0000
59 T A 0.2853
60 I A 0.0000
61 S A -0.6595
62 G A -1.0282
63 L A 0.0000
64 K A -2.3808
65 P A -1.6690
66 G A -1.4637
67 V A -1.4480
68 D A -2.1400
69 Y A 0.0000
70 T A -0.8080
71 I A 0.0000
72 T A -0.1309
73 V A 0.0000
74 Y A 0.0489
75 A A 0.0000
76 V A 0.0000
77 R A -3.4942
78 D A -4.0176
79 E A -4.1454
80 E A -3.4922
81 T A -2.2256
82 G A -2.3280
83 E A -3.0090
84 F A -1.0201
85 H A -0.7728
86 W A 0.0000
87 P A -0.4352
88 P A -0.3546
89 I A -0.0433
90 S A -0.4879
91 I A -0.6944
92 N A -1.7375
93 Y A -1.4927
94 R A -2.5545
95 T A -1.5242
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018