Project name: query_structure

Status: done

Started: 2026-03-17 01:31:19
Settings
Chain sequence(s) A: YCQKWMWTCDEERKCCEGLVCRLWCKRIINM
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:39)
Show buried residues

Minimal score value
-3.6701
Maximal score value
2.2827
Average score
-0.2638
Total score value
-8.1767

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Y A 0.5797
2 C A -0.1076
3 Q A -0.6450
4 K A -1.1635
5 W A 0.2699
6 M A 1.2043
7 W A 0.5184
8 T A 0.1822
9 C A -0.8616
10 D A -3.2437
11 E A -3.6701
12 E A -3.5471
13 R A -2.2648
14 K A -1.4112
15 C A 0.0000
16 C A -0.5019
17 E A -1.4374
18 G A -1.0007
19 L A 0.0000
20 V A 0.9560
21 C A 0.3769
22 R A -0.3968
23 L A 1.2070
24 W A 1.4137
25 C A 0.0000
26 K A -0.3494
27 R A -0.2854
28 I A 1.8413
29 I A 2.2827
30 N A 0.6416
31 M A 1.2358
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Laboratory of Theory of Biopolymers 2018