Project name: GGHKGHK20

Status: done

Started: 2026-02-23 04:25:29
Settings
Chain sequence(s) A: GGHKGHK
C: GGHKGHK
B: GGHKGHK
E: GGHKGHK
D: GGHKGHK
G: GGHKGHK
F: GGHKGHK
I: GGHKGHK
H: GGHKGHK
K: GGHKGHK
J: GGHKGHK
M: GGHKGHK
L: GGHKGHK
O: GGHKGHK
N: GGHKGHK
Q: GGHKGHK
P: GGHKGHK
S: GGHKGHK
R: GGHKGHK
T: GGHKGHK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:46)
Show buried residues

Minimal score value
-4.2997
Maximal score value
0.0
Average score
-3.0188
Total score value
-422.6357

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.6220
2 G A -2.9782
3 H A -3.1529
4 K A -4.1103
5 G A -3.3299
6 H A -2.9407
7 K A -2.5960
1 G B -1.4440
2 G B -2.5877
3 H B -2.7984
4 K B -4.0900
5 G B -3.8403
6 H B -4.1809
7 K B -3.2346
1 G C -2.5491
2 G C -2.7975
3 H C -3.1357
4 K C -3.9487
5 G C -3.2304
6 H C -3.4659
7 K C -3.6486
1 G D -2.3978
2 G D -2.4054
3 H D -2.5503
4 K D -3.4359
5 G D -2.9263
6 H D -3.7743
7 K D -4.2769
1 G E -3.0793
2 G E -3.1578
3 H E -3.2407
4 K E -3.6233
5 G E -3.0763
6 H E -3.3595
7 K E -3.0226
1 G F -3.3846
2 G F -3.4581
3 H F -3.8844
4 K F -3.6846
5 G F -2.9075
6 H F -3.1525
7 K F -3.3825
1 G G -2.8247
2 G G -2.7515
3 H G -3.4370
4 K G -3.4773
5 G G -2.9359
6 H G -3.2574
7 K G -4.1246
1 G H -1.4118
2 G H -2.4413
3 H H -3.3696
4 K H -3.6731
5 G H -3.4047
6 H H -3.0002
7 K H -2.4794
1 G I -1.8218
2 G I -1.9032
3 H I -2.4399
4 K I -2.9423
5 G I -2.6122
6 H I -2.8753
7 K I -2.4686
1 G J -1.5642
2 G J -1.8611
3 H J -2.5515
4 K J -3.2927
5 G J -3.3928
6 H J -3.2351
7 K J -3.6534
1 G K -1.3401
2 G K -1.8935
3 H K -2.5986
4 K K -3.2809
5 G K -2.4930
6 H K -2.5889
7 K K -2.4916
1 G L -2.6074
2 G L -2.9759
3 H L -3.7230
4 K L -3.9937
5 G L -4.2997
6 H L -3.5985
7 K L -2.8422
1 G M -3.4796
2 G M 0.0000
3 H M -3.6223
4 K M -4.2729
5 G M -3.0715
6 H M -3.1645
7 K M -2.9968
1 G N -1.7096
2 G N -2.7889
3 H N -2.8406
4 K N -4.1023
5 G N -3.5558
6 H N -3.1575
7 K N -4.2411
1 G O -1.3595
2 G O -2.2007
3 H O -2.5961
4 K O -3.3057
5 G O -2.6496
6 H O -2.7941
7 K O -2.6504
1 G P -1.7715
2 G P -2.4178
3 H P -2.9166
4 K P -3.1784
5 G P -2.5454
6 H P -2.8083
7 K P -2.9485
1 G Q -2.3441
2 G Q -2.7477
3 H Q -3.6118
4 K Q -3.8793
5 G Q -3.2567
6 H Q -2.8734
7 K Q -2.7671
1 G R -2.7744
2 G R -3.1308
3 H R -3.3277
4 K R -3.3456
5 G R -2.8706
6 H R -2.7009
7 K R -2.6380
1 G S -3.7032
2 G S -3.8760
3 H S -3.5487
4 K S -3.7612
5 G S -3.2212
6 H S -2.6515
7 K S -2.7988
1 G T -3.1016
2 G T -3.1467
3 H T -3.4571
4 K T -3.7920
5 G T -3.5839
6 H T -3.0610
7 K T -2.7267
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Laboratory of Theory of Biopolymers 2018