Project name: DK17-RF8

Status: done

Started: 2026-06-15 16:08:26
Settings
Chain sequence(s) D: DRQIKIWFQNRRMKWKKRWSLMRPF
input PDB
Selected Chain(s) D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with D chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:26)
Show buried residues

Minimal score value
-3.0768
Maximal score value
1.5066
Average score
-1.3373
Total score value
-33.4331

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D D -2.9142
2 R D -3.0257
3 Q D -2.0393
4 I D -0.5738
5 K D -1.9707
6 I D -0.9150
7 W D -0.1865
8 F D -0.5810
9 Q D -1.7139
10 N D -1.6592
11 R D -2.4196
12 R D -3.0768
13 M D -2.4253
14 K D -2.6812
15 W D -2.0838
16 K D -2.6510
17 K D -2.6084
18 R D -2.0576
19 W D -0.2843
20 S D -0.4281
21 L D 0.7010
22 M D 0.5695
23 R D -0.4489
24 P D 0.5341
25 F D 1.5066
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018