Project name: dfe123355a1fb8

Status: done

Started: 2024-06-10 13:11:26
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Chain sequence(s) H: QVQLQESGGGLVQPGGSLRLSCVLSNGIFSTYGMNWYRQAPGKQREFVASITSSGSTNYSPSVKGRFTISRENAKSTVNLQMNNLNPEDTAVYYCNTWSTWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:25)
Show buried residues

Minimal score value
-3.142
Maximal score value
1.1991
Average score
-0.7853
Total score value
-87.1703

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6889
2 V H -1.0458
3 Q H -1.9156
4 L H 0.0000
5 Q H -1.4157
6 E H 0.0000
7 S H -0.9770
8 G H -1.1175
9 G H -0.5943
11 G H 0.1366
12 L H 1.1503
13 V H 0.0940
14 Q H -1.3401
15 P H -1.7056
16 G H -1.6884
17 G H -1.1222
18 S H -1.2861
19 L H -0.8749
20 R H -1.9124
21 L H 0.0000
22 S H -0.6990
23 C H 0.0000
24 V H -0.2388
25 L H 0.0000
26 S H -1.2175
27 N H -1.4923
28 G H -0.5909
29 I H 1.1991
30 F H 0.0000
35 S H -0.5097
36 T H 0.2088
37 Y H 0.6134
38 G H 0.0239
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 Y H -0.2845
43 R H -1.3038
44 Q H -1.9941
45 A H 0.0000
46 P H -1.4900
47 G H -1.7919
48 K H -3.1420
49 Q H -3.0626
50 R H -2.6282
51 E H -2.6386
52 F H -0.7955
53 V H 0.0000
54 A H 0.0000
55 S H -0.3236
56 I H 0.0000
57 T H -0.5076
58 S H -0.7973
59 S H -0.6671
63 G H -1.1220
64 S H -0.8190
65 T H -0.9187
66 N H -1.5837
67 Y H -1.0795
68 S H 0.0000
69 P H -1.0537
70 S H -1.0211
71 V H 0.0000
72 K H -2.2493
74 G H -1.6389
75 R H -1.6188
76 F H 0.0000
77 T H -1.0048
78 I H 0.0000
79 S H -0.8915
80 R H -1.8208
81 E H -2.8171
82 N H -2.2291
83 A H -1.7744
84 K H -2.4460
85 S H -1.2964
86 T H -1.2844
87 V H 0.0000
88 N H -0.9981
89 L H 0.0000
90 Q H -1.1486
91 M H 0.0000
92 N H -1.6467
93 N H -2.1079
94 L H 0.0000
95 N H -1.7972
96 P H -1.5581
97 E H -2.1169
98 D H 0.0000
99 T H -0.7486
100 A H 0.0000
101 V H -0.3607
102 Y H 0.0000
103 Y H -0.3056
104 C H 0.0000
105 N H 0.0000
106 T H 0.0000
107 W H 1.1768
116 S H 0.4639
117 T H 0.2423
118 W H 0.0869
119 G H -0.8499
120 Q H -1.5092
121 G H -0.8988
122 T H -0.8745
123 Q H -0.6305
124 V H 0.0000
125 T H -0.1078
126 V H 0.0000
127 S H -0.6139
128 S H -0.7646
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Laboratory of Theory of Biopolymers 2018