Project name: EAK16-II_8

Status: done

Started: 2026-06-24 07:11:31
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Chain sequence(s) A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK
E: AEAEAKAKAEAEAKAK
D: AEAEAKAKAEAEAKAK
G: AEAEAKAKAEAEAKAK
F: AEAEAKAKAEAEAKAK
H: AEAEAKAKAEAEAKAK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:50)
Show buried residues

Minimal score value
-3.4291
Maximal score value
0.0
Average score
-2.25
Total score value
-288.0004

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.3802
2 E A -2.4171
3 A A -2.4223
4 E A -2.7362
5 A A -2.2990
6 K A -2.8264
7 A A -2.7457
8 K A -2.8291
9 A A -2.3305
10 E A -2.7542
11 A A -3.0932
12 E A -3.3682
13 A A -2.4839
14 K A -2.9664
15 A A -2.4485
16 K A -2.5315
1 A B -1.9794
2 E B -3.0138
3 A B -2.5566
4 E B -2.8235
5 A B -2.8998
6 K B -2.8950
7 A B -2.4745
8 K B -2.8552
9 A B 0.0000
10 E B -2.5674
11 A B -2.6903
12 E B -2.8912
13 A B -2.5804
14 K B -2.8424
15 A B -2.2572
16 K B -2.4118
1 A C -1.8373
2 E C -2.5959
3 A C -2.0652
4 E C -2.7737
5 A C 0.0000
6 K C -2.2644
7 A C -2.5130
8 K C -2.5472
9 A C 0.0000
10 E C -2.7835
11 A C 0.0000
12 E C -3.1057
13 A C -2.9268
14 K C -2.9505
15 A C -2.3558
16 K C -2.6807
1 A D -1.5852
2 E D -2.1062
3 A D -2.2315
4 E D -2.8656
5 A D 0.0000
6 K D -3.1721
7 A D -2.7720
8 K D -2.8806
9 A D 0.0000
10 E D -2.8687
11 A D 0.0000
12 E D -3.2537
13 A D -3.1162
14 K D -3.1933
15 A D -2.5197
16 K D -2.9305
1 A E -1.0817
2 E E -2.1143
3 A E -2.0087
4 E E -2.6704
5 A E -1.9355
6 K E -2.0229
7 A E -2.4855
8 K E -2.5080
9 A E 0.0000
10 E E -2.6609
11 A E 0.0000
12 E E -2.6092
13 A E -2.2417
14 K E -2.7765
15 A E -2.5272
16 K E -2.3623
1 A F -1.4616
2 E F -2.3668
3 A F -2.3867
4 E F -2.5901
5 A F -2.1913
6 K F -3.0953
7 A F -2.9790
8 K F -2.6265
9 A F -2.5181
10 E F -3.4291
11 A F 0.0000
12 E F -3.3217
13 A F -2.6999
14 K F -3.1698
15 A F -2.6523
16 K F -2.5690
1 A G -1.4400
2 E G -1.9161
3 A G -2.0837
4 E G -2.6079
5 A G 0.0000
6 K G -2.9015
7 A G -2.6139
8 K G -2.8180
9 A G 0.0000
10 E G -2.8240
11 A G 0.0000
12 E G -3.1101
13 A G -3.0473
14 K G -2.9209
15 A G -2.4911
16 K G -2.8953
1 A H -1.5424
2 E H -2.1117
3 A H -2.2038
4 E H -2.4443
5 A H -1.8673
6 K H -2.2446
7 A H -2.5285
8 K H -2.2489
9 A H 0.0000
10 E H -2.6282
11 A H 0.0000
12 E H -2.5632
13 A H -2.2710
14 K H -2.8185
15 A H -2.1611
16 K H -2.3692
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Laboratory of Theory of Biopolymers 2018