| Chain sequence(s) |
A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK B: AEAEAKAKAEAEAKAK E: AEAEAKAKAEAEAKAK D: AEAEAKAKAEAEAKAK G: AEAEAKAKAEAEAKAK F: AEAEAKAKAEAEAKAK H: AEAEAKAKAEAEAKAK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:12:48)
[INFO] Main: Simulation completed successfully. (00:12:50)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -1.3802 | |
| 2 | E | A | -2.4171 | |
| 3 | A | A | -2.4223 | |
| 4 | E | A | -2.7362 | |
| 5 | A | A | -2.2990 | |
| 6 | K | A | -2.8264 | |
| 7 | A | A | -2.7457 | |
| 8 | K | A | -2.8291 | |
| 9 | A | A | -2.3305 | |
| 10 | E | A | -2.7542 | |
| 11 | A | A | -3.0932 | |
| 12 | E | A | -3.3682 | |
| 13 | A | A | -2.4839 | |
| 14 | K | A | -2.9664 | |
| 15 | A | A | -2.4485 | |
| 16 | K | A | -2.5315 | |
| 1 | A | B | -1.9794 | |
| 2 | E | B | -3.0138 | |
| 3 | A | B | -2.5566 | |
| 4 | E | B | -2.8235 | |
| 5 | A | B | -2.8998 | |
| 6 | K | B | -2.8950 | |
| 7 | A | B | -2.4745 | |
| 8 | K | B | -2.8552 | |
| 9 | A | B | 0.0000 | |
| 10 | E | B | -2.5674 | |
| 11 | A | B | -2.6903 | |
| 12 | E | B | -2.8912 | |
| 13 | A | B | -2.5804 | |
| 14 | K | B | -2.8424 | |
| 15 | A | B | -2.2572 | |
| 16 | K | B | -2.4118 | |
| 1 | A | C | -1.8373 | |
| 2 | E | C | -2.5959 | |
| 3 | A | C | -2.0652 | |
| 4 | E | C | -2.7737 | |
| 5 | A | C | 0.0000 | |
| 6 | K | C | -2.2644 | |
| 7 | A | C | -2.5130 | |
| 8 | K | C | -2.5472 | |
| 9 | A | C | 0.0000 | |
| 10 | E | C | -2.7835 | |
| 11 | A | C | 0.0000 | |
| 12 | E | C | -3.1057 | |
| 13 | A | C | -2.9268 | |
| 14 | K | C | -2.9505 | |
| 15 | A | C | -2.3558 | |
| 16 | K | C | -2.6807 | |
| 1 | A | D | -1.5852 | |
| 2 | E | D | -2.1062 | |
| 3 | A | D | -2.2315 | |
| 4 | E | D | -2.8656 | |
| 5 | A | D | 0.0000 | |
| 6 | K | D | -3.1721 | |
| 7 | A | D | -2.7720 | |
| 8 | K | D | -2.8806 | |
| 9 | A | D | 0.0000 | |
| 10 | E | D | -2.8687 | |
| 11 | A | D | 0.0000 | |
| 12 | E | D | -3.2537 | |
| 13 | A | D | -3.1162 | |
| 14 | K | D | -3.1933 | |
| 15 | A | D | -2.5197 | |
| 16 | K | D | -2.9305 | |
| 1 | A | E | -1.0817 | |
| 2 | E | E | -2.1143 | |
| 3 | A | E | -2.0087 | |
| 4 | E | E | -2.6704 | |
| 5 | A | E | -1.9355 | |
| 6 | K | E | -2.0229 | |
| 7 | A | E | -2.4855 | |
| 8 | K | E | -2.5080 | |
| 9 | A | E | 0.0000 | |
| 10 | E | E | -2.6609 | |
| 11 | A | E | 0.0000 | |
| 12 | E | E | -2.6092 | |
| 13 | A | E | -2.2417 | |
| 14 | K | E | -2.7765 | |
| 15 | A | E | -2.5272 | |
| 16 | K | E | -2.3623 | |
| 1 | A | F | -1.4616 | |
| 2 | E | F | -2.3668 | |
| 3 | A | F | -2.3867 | |
| 4 | E | F | -2.5901 | |
| 5 | A | F | -2.1913 | |
| 6 | K | F | -3.0953 | |
| 7 | A | F | -2.9790 | |
| 8 | K | F | -2.6265 | |
| 9 | A | F | -2.5181 | |
| 10 | E | F | -3.4291 | |
| 11 | A | F | 0.0000 | |
| 12 | E | F | -3.3217 | |
| 13 | A | F | -2.6999 | |
| 14 | K | F | -3.1698 | |
| 15 | A | F | -2.6523 | |
| 16 | K | F | -2.5690 | |
| 1 | A | G | -1.4400 | |
| 2 | E | G | -1.9161 | |
| 3 | A | G | -2.0837 | |
| 4 | E | G | -2.6079 | |
| 5 | A | G | 0.0000 | |
| 6 | K | G | -2.9015 | |
| 7 | A | G | -2.6139 | |
| 8 | K | G | -2.8180 | |
| 9 | A | G | 0.0000 | |
| 10 | E | G | -2.8240 | |
| 11 | A | G | 0.0000 | |
| 12 | E | G | -3.1101 | |
| 13 | A | G | -3.0473 | |
| 14 | K | G | -2.9209 | |
| 15 | A | G | -2.4911 | |
| 16 | K | G | -2.8953 | |
| 1 | A | H | -1.5424 | |
| 2 | E | H | -2.1117 | |
| 3 | A | H | -2.2038 | |
| 4 | E | H | -2.4443 | |
| 5 | A | H | -1.8673 | |
| 6 | K | H | -2.2446 | |
| 7 | A | H | -2.5285 | |
| 8 | K | H | -2.2489 | |
| 9 | A | H | 0.0000 | |
| 10 | E | H | -2.6282 | |
| 11 | A | H | 0.0000 | |
| 12 | E | H | -2.5632 | |
| 13 | A | H | -2.2710 | |
| 14 | K | H | -2.8185 | |
| 15 | A | H | -2.1611 | |
| 16 | K | H | -2.3692 |