Project name: Leu

Status: done

Started: 2026-07-13 15:44:56
Settings
Chain sequence(s) A: MGSSHHHHHHSQDPTSLAYVDALCALDHPYRADSACDQLFDAAMRELTRYHCEHTPGYHQWLRANGLDDQTLEKMNDWSRLPPIFANYFKHQLLLSTTGQDALELTSSGTTGQKSRMRYDTRSIQAAQNMVERIFEYYGWNTPQQPCNYLLLSYEPAGAITLGTAYTDQYLCKYAPVNQACYALRHNGKGNEFDPFGVIRALQEFAVQGLPVRMLGFPAFLWFALERMQEMGLPPIQLHPESLVFLGGGWKTHADKAIPRSLLYQRLGEQLGIPDERCRDGYGSVEHPVPYVECRHHHFHVPTYARAYIRDTANMAVQPYGKPGFLHLTSPYITSSPAHSIVVSDLAVLHSAVECGCGLATDWFELLGRAGTSKSRSCAIAASELIKES
C: MYLVNGKIISDLEPDAVLAELKSSLADTLAYPPSVQQVLDCAGRFADSLETIASELALDTATIAALRGFCRRDLLEAKLRHELGEQPFSLRRFDYTQPRFEAWQPLGLVVHITPANAPLLPFMAVLESLLVGNVNWLRPSSSDHGLNAQLLVEFLRHDLSGKLAPYVSVLPLPSDQLSTLLECADAVSAWGSNTALTAIRSQLRPGCRWIDWGHRISFTYLDPESAGNTDYDALADDVCRFDQQACSSPQCLLVDSTDENVLREVASAVASALARRAPVWPALQPDIQEAAEISSQMAFLQLDHTFAGLTGSFEEGDGWRVAWVQRQELAPSPLYRTLQIRPAPRARLVEILLPWRPYLQSCALIAETNELPMLSRQLLAAGVSRVCQAGAMHDGYEGEPHDGVYALTRLARRVSVSLKAEQLPGHVTLDKLAVNPPELAGVPVMDKEKFQQNGVTSKAQVFFRSGGSSGTPKLAGFSHRDYHSQMQAAADGLFSAGLDPAQDRVMNLLYGSNLYGGLLSFFTILDKLSVPHYPMGGPINDDFSQIRHFIVTQRVNTLIGMPSTIYQLFEREGAALRAYGGVRKIFAGGEHISEERRQFLSSFGIQVIRSAIYGSVDAGPLGHACTCCHDGEFHLLSDIQWLEILALDSDQPIQPGETGRLVFTPLAREGQVIQRYDLGDLGHWLPGLCACGLPAPRFRLVGRHGTLIRVGSIFVNPTELSAGLAFPVQWLIGNHAGGGEYIHVLAEGDVNQVRGHLMQHKMLNQVVSGGMLQLEIIPTPAGQFRRHPQSGKTPLVLDSRT
B: MGSSHHHHHHSQDPTSLAYVDALCALDHPYRADSACDQLFDAAMRELTRYHCEHTPGYHQWLRANGLDDQTLEKMNDWSRLPPIFANYFKHQLLLSTTGQDALELTSSGTTGQKSRMRYDTRSIQAAQNMVERIFEYYGWNTPQQPCNYLLLSYEPAGAITLGTAYTDQYLCKYAPVNQACYALRHNGKGNEFDPFGVIRALQEFAVQGLPVRMLGFPAFLWFALERMQEMGLPPIQLHPESLVFLGGGWKTHADKAIPRSLLYQRLGEQLGIPDERCRDGYGSVEHPVPYVECRHHHFHVPTYARAYIRDTANMAVQPYGKPGFLHLTSPYITSSPAHSIVVSDLAVLHSAVECGCGLATDWFELLGRAGTSKSRSCAIAASELIKES
D: MYLVNGKIISDLEPDAVLAELKSSLADTLAYPPSVQQVLDCAGRFADSLETIASELALDTATIAALRGFCRRDLLEAKLRHELGEQPFSLRRFDYTQPRFEAWQPLGLVVHITPANAPLLPFMAVLESLLVGNVNWLRPSSSDHGLNAQLLVEFLRHDLSGKLAPYVSVLPLPSDQLSTLLECADAVSAWGSNTALTAIRSQLRPGCRWIDWGHRISFTYLDPESAGNTDYDALADDVCRFDQQACSSPQCLLVDSTDENVLREVASAVASALARRAPVWPALQPDIQEAAEISSQMAFLQLDHTFAGLTGSFEEGDGWRVAWVQRQELAPSPLYRTLQIRPAPRARLVEILLPWRPYLQSCALIAETNELPMLSRQLLAAGVSRVCQAGAMHDGYEGEPHDGVYALTRLARRVSVSLKAEQLPGHVTLDKLAVNPPELAGVPVMDKEKFQQNGVTSKAQVFFRSGGSSGTPKLAGFSHRDYHSQMQAAADGLFSAGLDPAQDRVMNLLYGSNLYGGLLSFFTILDKLSVPHYPMGGPINDDFSQIRHFIVTQRVNTLIGMPSTIYQLFEREGAALRAYGGVRKIFAGGEHISEERRQFLSSFGIQVIRSAIYGSVDAGPLGHACTCCHDGEFHLLSDIQWLEILALDSDQPIQPGETGRLVFTPLAREGQVIQRYDLGDLGHWLPGLCACGLPAPRFRLVGRHGTLIRVGSIFVNPTELSAGLAFPVQWLIGNHAGGGEYIHVLAEGDVNQVRGHLMQHKMLNQVVSGGMLQLEIIPTPAGQFRRHPQSGKTPLVLDSRT
input PDB
Selected Chain(s) A,B,C,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:04)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:42:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:43:59)
Show buried residues

Minimal score value
-4.2138
Maximal score value
1.477
Average score
-0.6547
Total score value
-1558.2627

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7447
2 G A -0.2460
3 S A -0.6995
4 S A -1.2116
5 H A -2.1210
6 H A -2.4802
7 H A -2.6958
8 H A -2.7189
9 H A -2.6176
10 H A -2.6329
11 S A -2.2418
12 Q A -2.7012
13 D A -2.7402
14 P A -1.9353
15 T A -0.9709
16 S A -0.9199
17 L A 0.0000
18 A A -0.1827
19 Y A 0.6783
20 V A 0.0000
21 D A -0.7977
22 A A 0.0370
23 L A 0.0000
24 C A -0.5974
25 A A -0.6235
26 L A -1.0189
27 D A -2.2060
28 H A -1.4150
29 P A 0.0000
30 Y A 0.0000
31 R A -1.0509
32 A A -0.8710
33 D A -1.3909
34 S A -1.2876
35 A A -1.0446
36 C A 0.0000
37 D A -2.1329
38 Q A -1.8782
39 L A -0.4900
40 F A 0.0000
41 D A -1.7382
42 A A -0.9211
43 A A 0.0000
44 M A 0.0000
45 R A -1.5633
46 E A -0.8713
47 L A 0.0000
48 T A 0.0000
49 R A -2.4881
50 Y A -1.4384
51 H A 0.0000
52 C A -1.9130
53 E A -2.3967
54 H A -1.4083
55 T A 0.0000
56 P A -0.8776
57 G A -1.0504
58 Y A 0.0000
59 H A -2.3447
60 Q A -2.1859
61 W A 0.0000
62 L A 0.0000
63 R A -3.1090
64 A A -1.8218
65 N A -1.8880
66 G A -1.9052
67 L A 0.0000
68 D A -2.8867
69 D A -3.4117
70 Q A -3.0661
71 T A -2.5781
72 L A 0.0000
73 E A -3.9342
74 K A -3.5052
75 M A 0.0000
76 N A -3.1484
77 D A -2.4906
78 W A 0.0000
79 S A 0.0000
80 R A -2.2582
81 L A 0.0000
82 P A 0.0000
83 P A -0.3574
84 I A 0.0000
85 F A 0.0000
86 A A 0.0000
87 N A -1.2168
88 Y A 0.0000
89 F A 0.0000
90 K A -1.9084
91 H A -1.7031
92 Q A -0.7338
93 L A -0.1833
94 L A 0.0000
95 L A -0.3079
96 S A 0.0000
97 T A -0.9264
98 T A -0.9949
99 G A 0.0000
100 Q A -2.0191
101 D A -2.3614
102 A A -1.1848
103 L A -0.1995
104 E A -0.7242
105 L A 0.0000
106 T A 0.0000
107 S A -0.7957
108 S A -0.3829
109 G A -0.8992
110 T A -0.6034
111 T A -0.8990
112 G A -1.3344
113 Q A -2.1549
114 K A -2.0588
115 S A 0.0000
116 R A -1.7524
117 M A 0.0000
118 R A -0.9425
119 Y A 0.0000
120 D A -0.9957
121 T A -0.6393
122 R A -1.1892
123 S A 0.0000
124 I A -0.6673
125 Q A -1.4842
126 A A 0.0000
127 A A -0.6258
128 Q A -0.9032
129 N A -1.2104
130 M A 0.0000
131 V A -0.6399
132 E A -1.5644
133 R A -1.6187
134 I A 0.0000
135 F A 0.0000
136 E A -2.1691
137 Y A -0.7045
138 Y A -0.6292
139 G A -0.9678
140 W A 0.0000
141 N A -1.6305
142 T A -1.4010
143 P A -1.2349
144 Q A -1.5943
145 Q A -0.9834
146 P A -0.5246
147 C A 0.0000
148 N A 0.0000
149 Y A 0.0000
150 L A 0.0000
151 L A 0.0000
152 L A 0.0000
153 S A 0.0000
154 Y A -0.1196
155 E A -0.7702
156 P A -0.3644
157 A A -0.5937
158 G A -0.3841
159 A A 0.1117
160 I A 0.4367
161 T A 0.2110
162 L A 0.2453
163 G A 0.0588
164 T A 0.0383
165 A A 0.0000
166 Y A 0.3960
167 T A 0.0969
168 D A 0.0000
169 Q A -0.5932
170 Y A -0.4482
171 L A 0.0000
172 C A -0.5906
173 K A -1.6466
174 Y A 0.0000
175 A A 0.0000
176 P A -0.5884
177 V A 0.3604
178 N A -0.5139
179 Q A -1.0128
180 A A -0.2858
181 C A 0.0000
182 Y A -0.0828
183 A A 0.0000
184 L A 0.0000
185 R A -0.8248
186 H A -1.3104
187 N A -1.5988
188 G A -1.7795
189 K A -2.2526
190 G A -1.5655
191 N A -1.4257
192 E A -1.0958
193 F A -0.1191
194 D A 0.0000
195 P A 0.0000
196 F A 0.0000
197 G A 0.0000
198 V A 0.0000
199 I A 0.0000
200 R A -2.4466
201 A A 0.0000
202 L A 0.0000
203 Q A -1.7630
204 E A -1.5429
205 F A 0.0000
206 A A -0.5734
207 V A 0.6797
208 Q A -0.2431
209 G A -0.3379
210 L A -0.4235
211 P A 0.0000
212 V A 0.0000
213 R A 0.0000
214 M A 0.0000
215 L A 0.0000
216 G A 0.0000
217 F A 0.0000
218 P A 0.0000
219 A A -0.5499
220 F A 0.1100
221 L A 0.0000
222 W A 0.0000
223 F A 0.0944
224 A A 0.0000
225 L A 0.0000
226 E A -1.5169
227 R A 0.0000
228 M A 0.0000
229 Q A -2.1188
230 E A -2.4957
231 M A -1.5237
232 G A -1.1534
233 L A -0.3808
234 P A -0.4558
235 P A -1.2045
236 I A -0.7957
237 Q A -1.5452
238 L A 0.0000
239 H A -1.2050
240 P A -1.5721
241 E A -2.0489
242 S A 0.0000
243 L A 0.0000
244 V A 0.0000
245 F A 0.0000
246 L A 0.0000
247 G A -0.4143
248 G A -0.8866
249 G A -0.9059
250 W A -1.3641
251 K A -2.8462
252 T A -2.2008
253 H A -2.1042
254 A A -2.0725
255 D A -3.3421
256 K A -3.1707
257 A A -1.9992
258 I A 0.0000
259 P A -0.5814
260 R A -0.6701
261 S A -0.8106
262 L A -0.3121
263 L A 0.0000
264 Y A 0.0000
265 Q A -2.1435
266 R A -1.8197
267 L A 0.0000
268 G A -2.1836
269 E A -2.5695
270 Q A 0.0000
271 L A 0.0000
272 G A -1.7211
273 I A 0.0000
274 P A -2.2784
275 D A -3.1747
276 E A -3.3867
277 R A -2.3003
278 C A 0.0000
279 R A 0.0000
280 D A 0.0000
281 G A -0.2769
282 Y A -0.2573
283 G A -0.5218
284 S A -0.2571
285 V A -0.3032
286 E A 0.0000
287 H A 0.0000
288 P A -0.1132
289 V A 0.0000
290 P A -0.1900
291 Y A 0.0000
292 V A 0.0000
293 E A 0.0000
294 C A 0.0000
295 R A -3.1455
296 H A -2.1877
297 H A -1.8208
298 H A -1.1077
299 F A 0.0000
300 H A 0.0000
301 V A 0.0000
302 P A 0.0000
303 T A 0.0000
304 Y A 0.0000
305 A A 0.0000
306 R A -0.5436
307 A A 0.0000
308 Y A 0.3613
309 I A 0.0000
310 R A -0.1529
311 D A -0.4640
312 T A 0.0000
313 A A -0.6385
314 N A -1.1020
315 M A -0.2984
316 A A -0.0364
317 V A 0.7367
318 Q A 0.0984
319 P A 0.0205
320 Y A 0.4450
321 G A -0.5829
322 K A -1.1193
323 P A -0.5470
324 G A 0.0000
325 F A 0.0000
326 L A 0.0000
327 H A 0.0000
328 L A 0.0000
329 T A 0.0000
330 S A 0.0000
331 P A 0.0000
332 Y A 0.0000
333 I A 0.0000
334 T A 0.0000
335 S A 0.0000
336 S A 0.0000
337 P A 0.0000
338 A A 0.0000
339 H A 0.0000
340 S A 0.0000
341 I A 0.0000
342 V A 0.0000
343 V A 0.0000
344 S A -0.7406
345 D A 0.0000
346 L A 0.0000
347 A A 0.0000
348 V A 0.0000
349 L A 0.0000
350 H A -0.5914
351 S A -0.1107
352 A A -0.1325
353 V A 0.5764
354 E A -1.2121
355 C A 0.0000
356 G A -0.8634
357 C A 0.0000
358 G A -0.5868
359 L A 0.0000
360 A A -0.0856
361 T A 0.0000
362 D A -0.4177
363 W A 0.0000
364 F A 0.0000
365 E A -0.9403
366 L A -0.0288
367 L A 0.5318
368 G A -0.5283
369 R A -1.5502
370 A A -0.7535
371 G A -0.9171
372 T A -1.1347
373 S A -1.4351
374 K A -2.0628
375 S A -1.4336
376 R A -1.5238
377 S A 0.0000
378 C A -0.1750
379 A A 0.0000
380 I A 0.0000
381 A A 0.0000
382 A A 0.1872
383 S A -0.1868
384 E A -0.5075
385 L A 0.1032
386 I A 0.6056
387 K A -0.9038
388 E A -1.1694
389 S A -0.6970
1 M B 0.7437
2 G B -0.2496
3 S B -0.7014
4 S B -1.2222
5 H B -2.1363
6 H B -2.4935
7 H B -2.7162
8 H B -2.7343
9 H B -2.6340
10 H B -2.6489
11 S B -2.2534
12 Q B -2.7074
13 D B -2.7405
14 P B -2.0157
15 T B -0.9971
16 S B -0.9397
17 L B 0.0000
18 A B -0.1904
19 Y B 0.6859
20 V B 0.0000
21 D B -0.7640
22 A B 0.0540
23 L B 0.0000
24 C B -0.5537
25 A B -0.5803
26 L B -0.9871
27 D B -2.1308
28 H B -1.3289
29 P B 0.0000
30 Y B 0.0000
31 R B -0.9655
32 A B -0.8292
33 D B -1.3918
34 S B -1.2991
35 A B -1.0573
36 C B 0.0000
37 D B -2.1818
38 Q B -1.9124
39 L B -0.5195
40 F B 0.0000
41 D B -1.8344
42 A B -0.9653
43 A B 0.0000
44 M B 0.0000
45 R B -1.7296
46 E B -1.0880
47 L B 0.0000
48 T B 0.0000
49 R B -2.9624
50 Y B 0.0000
51 H B 0.0000
52 C B -2.0587
53 E B -2.4837
54 H B -1.4443
55 T B 0.0000
56 P B -0.8354
57 G B -1.0534
58 Y B 0.0000
59 H B -2.3630
60 Q B -2.0350
61 W B 0.0000
62 L B 0.0000
63 R B -3.2674
64 A B -1.9255
65 N B -1.9480
66 G B -2.0297
67 L B 0.0000
68 D B -3.6360
69 D B -4.2052
70 Q B -3.4786
71 T B -2.9093
72 L B 0.0000
73 E B -4.2138
74 K B -3.6175
75 M B 0.0000
76 N B -3.2838
77 D B -2.7308
78 W B 0.0000
79 S B 0.0000
80 R B -2.3300
81 L B 0.0000
82 P B 0.0000
83 P B -0.3552
84 I B 0.0000
85 F B 0.0000
86 A B 0.0000
87 N B -1.1337
88 Y B 0.0000
89 F B 0.0000
90 K B -1.8063
91 H B -1.6467
92 Q B -0.7079
93 L B -0.1228
94 L B 0.0000
95 L B -0.3133
96 S B 0.0000
97 T B -0.9183
98 T B -0.9883
99 G B 0.0000
100 Q B -2.0138
101 D B -2.3470
102 A B -1.1424
103 L B -0.1028
104 E B -0.6478
105 L B 0.0000
106 T B 0.0000
107 S B -0.6581
108 S B -0.3615
109 G B -0.8619
110 T B -0.5984
111 T B -0.8801
112 G B -1.3147
113 Q B -2.0200
114 K B -1.7929
115 S B 0.0000
116 R B -1.3780
117 M B 0.0000
118 R B -0.8488
119 Y B 0.0000
120 D B -0.9644
121 T B -0.6089
122 R B -1.1829
123 S B 0.0000
124 I B -0.5746
125 Q B -1.4021
126 A B 0.0000
127 A B -0.5258
128 Q B -0.7766
129 N B -0.9451
130 M B 0.0000
131 V B -0.5196
132 E B -1.3710
133 R B -1.5320
134 I B 0.0000
135 F B 0.0000
136 E B -2.0272
137 Y B -0.4783
138 Y B -0.4587
139 G B -0.8720
140 W B 0.0000
141 N B -1.4752
142 T B -1.3497
143 P B -1.2066
144 Q B -1.5921
145 Q B -0.9961
146 P B -0.5355
147 C B 0.0000
148 N B 0.0000
149 Y B 0.0000
150 L B 0.0000
151 L B 0.0000
152 L B 0.0000
153 S B 0.0000
154 Y B -0.0241
155 E B -0.5984
156 P B -0.2618
157 A B -0.5549
158 G B -0.3243
159 A B 0.1538
160 I B 0.5593
161 T B 0.2700
162 L B 0.2597
163 G B 0.0621
164 T B 0.0353
165 A B 0.0000
166 Y B 0.3825
167 T B 0.0868
168 D B 0.0000
169 Q B -0.5294
170 Y B -0.4392
171 L B 0.0000
172 C B -0.5585
173 K B -1.5846
174 Y B 0.0000
175 A B 0.0000
176 P B -0.5766
177 V B 0.3574
178 N B -0.5101
179 Q B -0.9863
180 A B -0.2377
181 C B -0.2547
182 Y B -0.0917
183 A B 0.0000
184 L B 0.0000
185 R B -1.0614
186 H B -1.4447
187 N B -1.7763
188 G B -2.0021
189 K B -2.3340
190 G B -1.5772
191 N B -1.4418
192 E B -1.2044
193 F B -0.2251
194 D B 0.0000
195 P B 0.0000
196 F B 0.0000
197 G B -0.5350
198 V B 0.0000
199 I B 0.0000
200 R B -1.2055
201 A B -0.9260
202 L B 0.0000
203 Q B -1.4158
204 E B -1.5043
205 F B 0.0000
206 A B -0.5317
207 V B 0.5574
208 Q B -0.3659
209 G B -0.4118
210 L B -0.4272
211 P B 0.0000
212 V B 0.0000
213 R B 0.0000
214 M B 0.0000
215 L B 0.0000
216 G B 0.0000
217 F B 0.0000
218 P B 0.0000
219 A B 0.0000
220 F B 0.1280
221 L B 0.0000
222 W B 0.0000
223 F B 0.1765
224 A B 0.0000
225 L B 0.0000
226 E B -1.2694
227 R B 0.0000
228 M B 0.0000
229 Q B -1.8824
230 E B -2.0861
231 M B -1.1987
232 G B -1.0013
233 L B -0.3117
234 P B -0.4555
235 P B -1.1972
236 I B -0.7748
237 Q B -1.5167
238 L B 0.0000
239 H B -1.2021
240 P B -1.5193
241 E B -1.9273
242 S B 0.0000
243 L B 0.0000
244 V B 0.0000
245 F B 0.0000
246 L B 0.0000
247 G B -0.4574
248 G B -0.9883
249 G B -1.1553
250 W B -1.5065
251 K B -2.9555
252 T B -2.2467
253 H B -2.1091
254 A B -2.0775
255 D B -3.3515
256 K B -3.1890
257 A B -2.0685
258 I B 0.0000
259 P B -0.6078
260 R B -0.6683
261 S B -0.7915
262 L B -0.2391
263 L B 0.0000
264 Y B 0.0000
265 Q B -2.1499
266 R B -1.8636
267 L B 0.0000
268 G B -2.1772
269 E B -2.5797
270 Q B 0.0000
271 L B 0.0000
272 G B -1.6587
273 I B 0.0000
274 P B -2.2314
275 D B -3.1842
276 E B -3.3310
277 R B -2.2184
278 C B 0.0000
279 R B 0.0000
280 D B 0.0000
281 G B -0.2742
282 Y B -0.2732
283 G B -0.5138
284 S B -0.2417
285 V B -0.2198
286 E B 0.0000
287 H B 0.0000
288 P B -0.1057
289 V B 0.0000
290 P B -0.1777
291 Y B 0.0000
292 V B 0.0000
293 E B 0.0000
294 C B 0.0000
295 R B -3.1128
296 H B -2.1926
297 H B -1.8266
298 H B -1.1325
299 F B 0.0000
300 H B 0.0000
301 V B 0.0000
302 P B 0.0000
303 T B 0.0000
304 Y B 0.0000
305 A B 0.0000
306 R B -0.5717
307 A B 0.0000
308 Y B 0.3840
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778 P D -0.6042
779 T D -1.0329
780 P D -1.2081
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782 G D -1.7174
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787 H D -2.8247
788 P D -2.1316
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790 S D -1.9599
791 G D -2.5055
792 K D -3.0639
793 T D -2.3990
794 P D -1.0354
795 L D -0.0366
796 V D 0.0932
797 L D -0.5972
798 D D -0.6578
799 S D -0.8047
800 R D -1.1041
801 T D -0.5892
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Laboratory of Theory of Biopolymers 2018